View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19881_high_1 (Length: 593)
Name: NF19881_high_1
Description: NF19881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19881_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 16 - 576
Target Start/End: Original strand, 38086748 - 38087295
Alignment:
| Q |
16 |
atcttaaagcattagcacacaagtcacttctcttgtatatctaacatttaacatatttatttataatagacatgagagtaactattcacacttgaactca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38086748 |
atcttaaagcattagcacacaagtcacttctcttatatatctaacattcaactcatttatttatagtagacatgagagtaactattcacacttgaactca |
38086847 |
T |
|
| Q |
116 |
acaatccataatcattttttccaatatattattctttacacttcaaaggtggatttgatcatatacacctaatannnnnnnnnn-gggggtttatatgta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
38086848 |
acaatccataatcattttttccaatatattattctttacacttcaaaggtggatttgatcatatacacccaatatttttttttttgggggtttatatgta |
38086947 |
T |
|
| Q |
215 |
ccaaaaactaaaaacactgacacgtatagcttaagcggggaaaagcttctgatggaagcaatggttgtaaatccatttaattaagtattccaataatcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
38086948 |
ccaaaaactaaaaacactgacacgtatagcttaagcggggaaaagcttctgatggaagcaatggttgtaaatccatttaattaattattccaatactcta |
38087047 |
T |
|
| Q |
315 |
aaatatcagaaagagagacaaatttgcaacaaacaaactacttaaaatttccatatatggtttggtcctaaaatttccatatatggtttcccaaatgaat |
414 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38087048 |
aaatatcagtaagatagacaaatttgcaacaaacaaactacttaaaatttccatatatggtttggtcctaaaa--------------ttcccaaatgaat |
38087133 |
T |
|
| Q |
415 |
tgtatacaaaaaatgtggcatgtgtctgtgatataagagtgtgtgataaagaattagtgaaaagattacttacataaactaagaatttcaaagaagaaga |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38087134 |
tgtatacaaaaaatgtggcatgtgtctgtgatataagagtgtgtaataaagaattagtgaaaagattacttacataaactaagaatttcaaagaagaaga |
38087233 |
T |
|
| Q |
515 |
aaaagacgagtaaattcagtggggtttccatacgatgaaacactattgttagtgacactagg |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38087234 |
aaaagacgagtaaattcagtggggtttccatacgatgaaacactattgttggtgacactagg |
38087295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University