View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19881_low_1 (Length: 596)
Name: NF19881_low_1
Description: NF19881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19881_low_1 |
 | |
|
| [»] scaffold1290 (1 HSPs) |
| | |
|
| [»] scaffold0175 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 23 - 576
Target Start/End: Complemental strand, 33832781 - 33832226
Alignment:
| Q |
23 |
cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat |
122 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||| |
|
|
| T |
33832781 |
cgatgtttccgctcagctaaaccattttgttgcggtgtgtgcggacaactagactgatgtatgataccatgagaaatcaaaaaggagttgaattgtgcag |
33832682 |
T |
|
| Q |
123 |
aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta |
222 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| | |||| |
|
|
| T |
33832681 |
aaaagtattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctctaaacaaaaagtcttaaatgcaccaaaaaattc |
33832582 |
T |
|
| Q |
223 |
tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||||| || || ||||| |
|
|
| T |
33832581 |
tgaacgatccttcaataaggttatccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagggaacgtggctagga |
33832482 |
T |
|
| Q |
323 |
ccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgact |
422 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| |||||||||||||| | ||||||| ||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
33832481 |
ccccaaatatcagaatgcacaatatcgaaggcatgcttggatcttttattgacactattgtgaaaagatgtctgaacatgtttgccaagctgacacgact |
33832382 |
T |
|
| Q |
423 |
cacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgc |
522 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
33832381 |
cacaatcaagagactttaaatgtgagagttgtggaaccaacactttcaacttatctaaacttggatgacccaaacgatgatgaatgatatctggagatgc |
33832282 |
T |
|
| Q |
523 |
agaaacattacatacaattggtgtaggtgattgaaggtaat--agaccttgttgtt |
576 |
Q |
| |
|
||||||||| |||||| |||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
33832281 |
agaaacattgcatacagttggtgaaggtggttcaaggtaatagagaccttgttgtt |
33832226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 566
Target Start/End: Original strand, 37918998 - 37919541
Alignment:
| Q |
23 |
cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat |
122 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |||||| ||||| ||| |||||||||| | ||||||| |||||| |||||||||| |||| |
|
|
| T |
37918998 |
cgatgtttctgctcagctacaccattttgttgcggtgtgcgcggataacgagactgatgtatgataccatgagaaataaaaaaggagttgaattatgcaa |
37919097 |
T |
|
| Q |
123 |
aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta |
222 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| | || | |
|
|
| T |
37919098 |
aaaagtattctttggcattgtgacttctcaaaactttgattgttttcccaaattgagtctttatctctaaacaaaaagtcttaaatgcaccaaaaaaatc |
37919197 |
T |
|
| Q |
223 |
tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga |
322 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| | || | || || |
|
|
| T |
37919198 |
tgaacaatccttcaataaggttatccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagagaacgcggctacga |
37919297 |
T |
|
| Q |
323 |
ccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgact |
422 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| || ||||||||||| | ||||||| ||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
37919298 |
ccccaaatatcagaatgcacaatatcgaaggcatgcttcgatcttttattgacactattgtgaaaagatgtctgaacatgtttgccaagctgacacgact |
37919397 |
T |
|
| Q |
423 |
cacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgc |
522 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||||| |||| | ||||||| |
|
|
| T |
37919398 |
cacaatcaagagactttaaatgtgagagttgtggaaccaacactttcaacttatctaaacttggatgacccaaacgatgttgaatgatatctagagatgc |
37919497 |
T |
|
| Q |
523 |
agaaacattacatacaattggtgtaggtgattgaaggtaataga |
566 |
Q |
| |
|
||||||||| |||||| |||||| ||||| || |||||| |||| |
|
|
| T |
37919498 |
agaaacattgcatacagttggtgaaggtggtttaaggtagtaga |
37919541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 529
Target Start/End: Original strand, 46595886 - 46596392
Alignment:
| Q |
23 |
cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat |
122 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||||||| |||||||| || |||||| | |||||| |||| ||||||||| ||||| |
|
|
| T |
46595886 |
cgatgtttcctttcagtgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcag |
46595985 |
T |
|
| Q |
123 |
aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta |
222 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||| | ||| ||| |||||||| ||||||||| ||||||||| ||| ||| |||||| |||||| |
|
|
| T |
46595986 |
aaaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataattg |
46596085 |
T |
|
| Q |
223 |
tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga |
322 |
Q |
| |
|
|||||| ||||||| ||| || ||||| || |||| || |||||||||||| |||| |||||||| | ||||| ||| |||| ||| || ||||| |
|
|
| T |
46596086 |
tgaacggtccttcagtaaagtgatccaggtgcatctagaaaaatcatcgatgaaagtgacataatatctatatcccaaagtagacatcacccgactagga |
46596185 |
T |
|
| Q |
323 |
ccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttg-tcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgac |
421 |
Q |
| |
|
||||| | ||||||||| ||||||||||| | | |||||||||||||| | || ||| ||| ||||| | |||||| |||||||| | ||||||| |
|
|
| T |
46596186 |
ccccacacatcagaatgaacaatatcaaagggagacttggatcttttattggaactgcttgggaa-agatgctctaacatgcttgccaagttgacatgac |
46596284 |
T |
|
| Q |
422 |
tcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatg |
521 |
Q |
| |
|
|||||||| | ||||| |||||| | ||||| ||||| ||||| ||||||||||| | |||||||||||| |||||| ||||||| |||| ||||||| |
|
|
| T |
46596285 |
tcacaatccaatgacttcaaatgtaaaagttgaggaaccaacacctttaacttatcaaaacttggatgacccaaacgacgatgaatcatatccggagatg |
46596384 |
T |
|
| Q |
522 |
cagaaaca |
529 |
Q |
| |
|
|||||||| |
|
|
| T |
46596385 |
cagaaaca |
46596392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 529
Target Start/End: Original strand, 22504832 - 22505338
Alignment:
| Q |
23 |
cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat |
122 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||| |||||||| || |||||| | |||||| |||| ||||||||| ||||| |
|
|
| T |
22504832 |
cgatgtttcctttcagcaacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcag |
22504931 |
T |
|
| Q |
123 |
aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta |
222 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | ||| |||| |||||||| ||| ||||| ||||||||| ||| ||| |||||| |||||| |
|
|
| T |
22504932 |
aaaaatattcttttgcattgtcactctacaaaattcgaattatttttccaaattggttctatatctctgaacaaaatgtctgaaaggcaccaaataattg |
22505031 |
T |
|
| Q |
223 |
tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga |
322 |
Q |
| |
|
|||||| ||||||| ||| || ||||| || |||| || |||||||||||| |||| |||||||| | ||||| ||| |||| ||| || ||||| |
|
|
| T |
22505032 |
tgaacggtccttcagtaaagtgatccaggtgcatctagaaaaatcatcgatgaaagtgacataatatctatatcccaaagtagacatcacccgactagga |
22505131 |
T |
|
| Q |
323 |
ccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgact |
422 |
Q |
| |
|
||||| | ||||||||| ||||||||||| | | ||||||||||| || | || | ||| ||||| |||||| |||||||| | |||||||| |
|
|
| T |
22505132 |
ccccacacatcagaatgaacaatatcaaagggagacttggatcttttgttggaactgcttggaaaagatgctataacatgcttgccaagttgacatgact |
22505231 |
T |
|
| Q |
423 |
cacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgc |
522 |
Q |
| |
|
||||||| | ||||| |||||||| ||||| ||||| ||||| ||||||||||| | ||| |||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
22505232 |
cacaatccaatgacttcaaatgtgaaagttgaggaaccaacacctttaacttatcaaaactaggatgacccaaacgacgatgaataatatccggagatgc |
22505331 |
T |
|
| Q |
523 |
agaaaca |
529 |
Q |
| |
|
||||||| |
|
|
| T |
22505332 |
agaaaca |
22505338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 38 - 529
Target Start/End: Complemental strand, 50960657 - 50960163
Alignment:
| Q |
38 |
gcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaat--attcttt |
135 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || |||||| | |||||| |||| ||||||||| ||||| ||||| ||||||| |
|
|
| T |
50960657 |
gcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaaataattcttt |
50960558 |
T |
|
| Q |
136 |
ggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaa-agtcgtaaatgcaccacataattatgaacgatcctt |
234 |
Q |
| |
|
||||||||||| | ||||| | ||| ||| |||||||| ||||||||| ||||||||| |||| ||| |||||| |||||| |||||| ||||| |
|
|
| T |
50960557 |
tgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatagtctgaaaggcaccaaataattgtgaacggtcctt |
50960458 |
T |
|
| Q |
235 |
caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca |
334 |
Q |
| |
|
|| || || ||||| || |||| || |||||||| ||| |||| |||| ||| | ||||| ||| |||| ||| || |||||||||| | |||| |
|
|
| T |
50960457 |
caggaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacatgatatctatatcccaaagtagacaacacccgactaggaccccacacatca |
50960358 |
T |
|
| Q |
335 |
gaatggacaatatcaaaagcatgtttggatcttttatttgtcttg-ttgtgaagagatgtccgaacatgtttgccaagctaacatgactcacaatcaaga |
433 |
Q |
| |
|
||||| ||||||||||| | | |||||||||||||| | || ||| ||| ||||| | ||||||||||||||| | ||||||||||||||| | |
|
|
| T |
50960357 |
gaatgaacaatatcaaagggagacttggatcttttattgggactgcttgagaa-agatgctctaacatgtttgccaagttgacatgactcacaatccaat |
50960259 |
T |
|
| Q |
434 |
gactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgcagaaaca |
529 |
Q |
| |
|
||||| |||||||| | ||| |||| ||||| ||||||||||||| |||||||||||| |||| | |||||| |||| |||||||||||||||| |
|
|
| T |
50960258 |
gacttcaaatgtgaaaattgaggaatcaacacctttaacttatctaaacttggatgacccaaacaacaatgaatcatatctggagatgcagaaaca |
50960163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 297
Target Start/End: Complemental strand, 37074940 - 37074678
Alignment:
| Q |
35 |
tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||||||| ||||||||| |||| |||||||| || | |||||||||||| |
|
|
| T |
37074940 |
tcagcgacaccattttgttgcggtgtgtgaggacagctggactgatgtataataccatgagaagccataaaggagttgaacgatgtagaaaaatattctt |
37074841 |
T |
|
| Q |
135 |
tggcattgtcacttctcaaaactttga-ttgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcct |
233 |
Q |
| |
|
||||||||||||| || ||| || || ||||||| ||||||| |||||||||| ||||||||| || ||| ||||| |||||| | ||||||||| |
|
|
| T |
37074840 |
tggcattgtcact-ctgtaaaattcgaattgttttaccaaatttggtctttatctctgaacaaaacgtttgaaagacaccaaataattctaaacgatcct |
37074742 |
T |
|
| Q |
234 |
tcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcc |
297 |
Q |
| |
|
|||||||||| ||||| || |||| ||||||||||| ||| |||| | |||||| |||||||| |
|
|
| T |
37074741 |
tcaataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgatataatatttgtatcc |
37074678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 398 - 529
Target Start/End: Complemental strand, 37074578 - 37074447
Alignment:
| Q |
398 |
acatgtttgccaagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaac |
497 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| | |||||||||||||| || || ||||| || || ||||||||||| | |||| ||||||| |||| |
|
|
| T |
37074578 |
acatgtttgccaagctgacatgattcacaatccaatgactttaaatgtgaaaggtgaggaactaatacctttaacttatccaaacttcgatgacccaaac |
37074479 |
T |
|
| Q |
498 |
gatgatgaataatatttggagatgcagaaaca |
529 |
Q |
| |
|
|| ||||||| |||| |||||||||||||||| |
|
|
| T |
37074478 |
gacgatgaatgatatctggagatgcagaaaca |
37074447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 403 - 507
Target Start/End: Original strand, 7567574 - 7567678
Alignment:
| Q |
403 |
tttgccaagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatga |
502 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||| | | | |||||||||| |||||| || |
|
|
| T |
7567574 |
tttgccaatctaacacgactcacaatcaagagacataaaatgtgacagttgaggaacaaacacttttgacttacccatatttggatgacccaaacgacga |
7567673 |
T |
|
| Q |
503 |
tgaat |
507 |
Q |
| |
|
||||| |
|
|
| T |
7567674 |
tgaat |
7567678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 27465783 - 27465837
Alignment:
| Q |
23 |
cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagact |
77 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||| ||||||||||||| |
|
|
| T |
27465783 |
cgatgtttccgctcagcgatactattttgttgtcgtgtgtgtggacaactagact |
27465837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 27517643 - 27517606
Alignment:
| Q |
41 |
acaccattttgttgtggtgtgtgcggacaactagactg |
78 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27517643 |
acaccattttgatgtggtgtgtgcggacaactagactg |
27517606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 27472858 - 27472912
Alignment:
| Q |
23 |
cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagact |
77 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
27472858 |
cgatatttctgctcagcaacactattttgttgtcgtgtgtgcagacaactagact |
27472912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 13327140 - 13327516
Alignment:
| Q |
16 |
aatatggcgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnn-gagttgaa |
114 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
13327140 |
aatatgacgatgttttcgctcagcgacaccattttgttgtggtgtgtgtggacaactagactgatgtgtgataccataagaaataaaaaaaagagttgaa |
13327239 |
T |
|
| Q |
115 |
ttgtgcataaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcacca |
214 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13327240 |
ttgtgcataaaaatattttttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacataaagtcgtaaatgcacca |
13327339 |
T |
|
| Q |
215 |
cataattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13327340 |
aataattatgaacgatccttcaataaggttatccaagtccatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacat |
13327439 |
T |
|
| Q |
315 |
gaataggaccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagat |
391 |
Q |
| |
|
|| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13327440 |
gattaggaccccaaatatcataatggaaaatatcaaaagcatgtttggatcttttatttgtctttttgtgaagagat |
13327516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 386 - 579
Target Start/End: Original strand, 13327795 - 13327988
Alignment:
| Q |
386 |
agagatgtccgaacatgtttgccaagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttg |
485 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13327795 |
agagatgtccgaacatgtttgccaagttaacgtgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttg |
13327894 |
T |
|
| Q |
486 |
gatgacctaaacgatgatgaataatatttggagatgcagaaacattacatacaattggtgtaggtgattgaaggtaatagaccttgttgttcac |
579 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13327895 |
aatgacctaaacgatgatgaataatatctggagatgcagaaacatcacatacaattggtgtaggtgattgaaggtaatagaccatgttgttcac |
13327988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 24 - 562
Target Start/End: Complemental strand, 36998854 - 36998316
Alignment:
| Q |
24 |
gatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcata |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||||| ||||| ||||||| | | |
|
|
| T |
36998854 |
gatgtttccgctcagcgacaccattttgttgcggtgtgtgtggacaactagactgatgtgtgataccatgagaaatcaaaaaggagttaaattgtgtaga |
36998755 |
T |
|
| Q |
124 |
aaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattat |
223 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | ||||||||||| ||||||||| | | ||| | |
|
|
| T |
36998754 |
aaagtattctttggcattgtcacttctcaaaactttgattgttttccccaactgagtctttatctctaaacaaaaagtcttaaatgcactagactattct |
36998655 |
T |
|
| Q |
224 |
gaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggac |
323 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |||| || |||||| |
|
|
| T |
36998654 |
gaactatccttcaataaggttatccaagtacatcgcgagaaatcatcgatgaaagtaacataatacctgtatcctaaattagaaggcatgcgactaggac |
36998555 |
T |
|
| Q |
324 |
cccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgactc |
423 |
Q |
| |
|
||||||||||| |||| |||||||| || ||||| || ||||||||||| || | |||| |||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
36998554 |
cccaaatatcaaaatgcacaatatcgaaggcatgcttagatcttttattgacactgctatgaaaagatgtccgaacatgtttgccaagttgacacgactc |
36998455 |
T |
|
| Q |
424 |
acaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgca |
523 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
36998454 |
acaatcaagagactttaaatgtgagagttatggaaccaacacttttaacttatctagacttggatgacccaaacgatgatgaatgatatctggagatgca |
36998355 |
T |
|
| Q |
524 |
gaaacattacatacaattggtgtaggtgattgaaggtaa |
562 |
Q |
| |
|
||||||| |||||| |||||| |||||||| ||||||| |
|
|
| T |
36998354 |
taaacattgcatacagttggtgaaggtgattcaaggtaa |
36998316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 25 - 529
Target Start/End: Complemental strand, 43734909 - 43734405
Alignment:
| Q |
25 |
atgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataa |
124 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||||||| || |||||| | |||||| |||| ||||||||| ||||| || |
|
|
| T |
43734909 |
atgtttcctttcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcaaaa |
43734810 |
T |
|
| Q |
125 |
aaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatg |
224 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| | ||| ||| |||||||| ||||||||| ||||||||| ||| ||| |||||| |||||| || |
|
|
| T |
43734809 |
aaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtcagaaaggcaccaaataattgtg |
43734710 |
T |
|
| Q |
225 |
aacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggacc |
324 |
Q |
| |
|
|||| ||||||| ||| | ||||| || |||| || ||| |||| ||| |||| |||||||| | ||||| ||| |||| ||| || ||||||| |
|
|
| T |
43734709 |
aacggtccttcagtaaaatgatccaggtgcatctagaaaaaccatcaatgaaagtgacataatatctttatcccaaagtagacatcacccgactaggacc |
43734610 |
T |
|
| Q |
325 |
ccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgactca |
424 |
Q |
| |
|
||| | ||||||||| ||||||||||| | | ||||||||||| || | || | | | ||||| | ||||||||||||||| | |||||||||| |
|
|
| T |
43734609 |
ccacacatcagaatgaacaatatcaaagggagacttggatcttttgttgggactgctcgggaaagatgctctaacatgtttgccaagttgacatgactca |
43734510 |
T |
|
| Q |
425 |
caatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgcag |
524 |
Q |
| |
|
||||| | ||||| |||||||| ||||| ||||| ||||| ||||||||||| | |||||||||||| |||||| ||||||| |||| |||||||||| |
|
|
| T |
43734509 |
caatccaatgacttcaaatgtgaaagttgaggaaccaacacctttaacttatcaaaacttggatgacccaaacgacgatgaatcatatccggagatgcag |
43734410 |
T |
|
| Q |
525 |
aaaca |
529 |
Q |
| |
|
||||| |
|
|
| T |
43734409 |
aaaca |
43734405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 6575214 - 6575318
Alignment:
| Q |
247 |
ccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatcagaatggacaata |
346 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||||||||||||| ||||| |||| || ||| || |||||||||||||||||||||| |||| | |
|
|
| T |
6575214 |
ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgactaggaccccaaatatcagaatgaacaaca |
6575313 |
T |
|
| Q |
347 |
tcaaa |
351 |
Q |
| |
|
||||| |
|
|
| T |
6575314 |
tcaaa |
6575318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 35 - 529
Target Start/End: Complemental strand, 36498702 - 36498208
Alignment:
| Q |
35 |
tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| |||| ||||||||| || | |||||||||||| |
|
|
| T |
36498702 |
tcagcgacaccattttgttgcggtgtgtgaggacaactggactgatgtataataccatgagaagccatgaaggagttgaatgatgtagaaaaatattctt |
36498603 |
T |
|
| Q |
135 |
tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt |
234 |
Q |
| |
|
| ||||||||||| | |||| | |||||||| ||||| || |||||||||| ||||||||| || |||||||||| |||||| |||||||||||| |
|
|
| T |
36498602 |
ttgcattgtcactccgtaaaattcgaattgttttaccaaactgggtctttatctctgaacaaaacgtttgaaatgcaccaaataattctgaacgatcctt |
36498503 |
T |
|
| Q |
235 |
caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca |
334 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||| ||| |||| |||||||| |||||||| ||| |||| | |||| || |||||||||||| |||| |
|
|
| T |
36498502 |
taataaggtgatccaagtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacacgactaggaccccaaacatca |
36498403 |
T |
|
| Q |
335 |
gaatggacaatatcaaaagcatgtttggatcttttatttg-tcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgactcacaatcaaga |
433 |
Q |
| |
|
||||||| |||||||| | | | ||||||||||| | | ||| ||| |||| | |||||||||||||||| |||||| |||||||||| |
|
|
| T |
36498402 |
gaatggatgatatcaaagggagacattgatcttttattggcacgacttg-gaaaagatactctgacatgtttgccaagctgacatgattcacaatcaaat |
36498304 |
T |
|
| Q |
434 |
gactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgcagaaaca |
529 |
Q |
| |
|
|||||||||||||| || || ||||| || || ||||||||||| | |||||||||||| |||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
36498303 |
gactttaaatgtgaaaggtgaggaactaatacctttaacttatccaaacttggatgacccaaacgacgatgaatgatatctggagatgcagaaaca |
36498208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 351
Target Start/End: Original strand, 35002348 - 35002465
Alignment:
| Q |
234 |
tcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatc |
333 |
Q |
| |
|
||||||| || |||||||| |||| ||||||||||| ||| || |||||||||| |||||||||||| | |||| |||||| |||||||||||| ||| |
|
|
| T |
35002348 |
tcaataaagtgatccaagtgcatctcgagaaatcatcaatgaaactaacataatatctgtatcctaaataatagggtacatgactaggaccccaaacatc |
35002447 |
T |
|
| Q |
334 |
agaatggacaatatcaaa |
351 |
Q |
| |
|
| |||| ||||||||||| |
|
|
| T |
35002448 |
ataatgaacaatatcaaa |
35002465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 35 - 529
Target Start/End: Original strand, 42359446 - 42359940
Alignment:
| Q |
35 |
tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| |||| ||||||||| || | ||||||||| || |
|
|
| T |
42359446 |
tcagcgacaccattttgttgcggtgtgtgaggacaactggactgatgtataataccatgagaagccataaaggagttgaatgatgtagaaaaatattatt |
42359545 |
T |
|
| Q |
135 |
tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt |
234 |
Q |
| |
|
||||||||||||| | |||| | |||||||| |||||||| |||||||||||||||||||| || ||| |||||| ||||||||||||||||||| |
|
|
| T |
42359546 |
tggcattgtcactccgtaaaattcgaattgttttaccaaattgggtctttatctatgaacaaaacgtttgaaaggcaccaaataattatgaacgatcctt |
42359645 |
T |
|
| Q |
235 |
caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca |
334 |
Q |
| |
|
||||||||| ||||| || |||| ||||||||||| ||| |||| |||||||| |||||||| ||| |||| | ||| || | |||||||||| |||| |
|
|
| T |
42359646 |
caataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacgcgactgggaccccaaacatca |
42359745 |
T |
|
| Q |
335 |
gaatggacaatatcaaaagcatgtttggatcttttatttg-tcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgactcacaatcaaga |
433 |
Q |
| |
|
||||| | |||| ||| | | | ||||||||||| | | ||| ||| |||| | |||||||||||||||| |||||| |||||||| | |
|
|
| T |
42359746 |
gaatgaatgatattaaagggagacattgatcttttattggcacgacttg-gaaaagatactctgacatgtttgccaagctgacatgattcacaatccaat |
42359844 |
T |
|
| Q |
434 |
gactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgcagaaaca |
529 |
Q |
| |
|
|||||||||||||| || || ||||| || || ||||||||||| | |||||||||||| |||||| |||||| |||| |||||||||||||||| |
|
|
| T |
42359845 |
gactttaaatgtgaaaggtgaggaactaatacctttaacttatccaaacttggatgacccaaacgacaatgaatgatatctggagatgcagaaaca |
42359940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 529
Target Start/End: Complemental strand, 6998709 - 6998199
Alignment:
| Q |
19 |
atggcgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgt |
118 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |||| ||| || |||||| | |||||| |||| ||||||||| || |
|
|
| T |
6998709 |
atggcgatgtttcctttcagcgacgccattttgttgtggtgtgtggggacgactcgattgatgtatgataccaagagaagccatgaaagagttgaatggt |
6998610 |
T |
|
| Q |
119 |
gcataaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacata |
218 |
Q |
| |
|
||| ||||||||||||| ||||| ||||| |||| | ||| ||| |||||||| ||||||||| | ||||||| ||| ||| |||||| ||| |
|
|
| T |
6998609 |
gcagaaaaatattcttttgcattttcactctggaaaattcaaattccttttccaaattggttctttatctctaaacaaaatgtctgaaaggcaccaaata |
6998510 |
T |
|
| Q |
219 |
attatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaat |
318 |
Q |
| |
|
||| |||||| ||||||| ||| || ||||| || |||| || |||||||| ||| |||| |||||||| |||||||| ||| |||| ||| || | |
|
|
| T |
6998509 |
attgtgaacggtccttcagtaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacatcacccgact |
6998410 |
T |
|
| Q |
319 |
aggaccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttg-ttgtgaagagatgtccgaacatgtttgccaagctaaca |
417 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||| | | ||||||||||| || | || ||| ||| ||||| | ||||||||||||||| | ||| |
|
|
| T |
6998409 |
aggaccccacacatcagaatgaacaatatcaaagggagacttggatcttttgttgggactgcttgggaa-agatgctctaacatgtttgccaagttgaca |
6998311 |
T |
|
| Q |
418 |
tgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttgga |
517 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||| ||||| ||||| ||||||||||| | |||||||||||| |||||| ||||||| |||| |||| |
|
|
| T |
6998310 |
tgactcacaatccaatgacttcaaatgtgaaagttgaggaaccaacacctttaacttatcaaaacttggatgacccaaacgacgatgaatcatatctgga |
6998211 |
T |
|
| Q |
518 |
gatgcagaaaca |
529 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6998210 |
gatgcagaaaca |
6998199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 529
Target Start/End: Complemental strand, 7927203 - 7926709
Alignment:
| Q |
35 |
tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt |
134 |
Q |
| |
|
|||||||| ||||||||||||||| |||| ||||||||||| |||||| | |||||| |||| ||||||||| ||||| |||||||||||| |
|
|
| T |
7927203 |
tcagcgacgccattttgttgtggtttgtggggacaactagattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaatattctt |
7927104 |
T |
|
| Q |
135 |
tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt |
234 |
Q |
| |
|
| ||||||||||| ||||| | ||| ||| |||||||| ||||||||| ||||||||| ||| ||| |||||| |||||| |||||| ||||| |
|
|
| T |
7927103 |
ttgcattgtcactctgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataattgtgaacggtcctt |
7927004 |
T |
|
| Q |
235 |
caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca |
334 |
Q |
| |
|
|| ||| || ||||| | |||| || |||||||| ||| |||| |||||||| | ||||| ||| |||| |||| || |||||||||| | |||| |
|
|
| T |
7927003 |
cagtaaagtgatccagatgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtagacagcacccgactaggaccccatacatca |
7926904 |
T |
|
| Q |
335 |
gaatggacaatatcaaaagcatgtttggatcttttatttgtcttg-ttgtgaagagatgtccgaacatgtttgccaagctaacatgactcacaatcaaga |
433 |
Q |
| |
|
||||| ||||||||||| | | |||||||||||||| | || ||| ||| ||||| | ||||||||||||||| | ||||||||||||||| | |
|
|
| T |
7926903 |
gaatgaacaatatcaaagggagacttggatcttttattgggactgcttgagaa-agatgctctaacatgtttgccaagttgacatgactcacaatccaat |
7926805 |
T |
|
| Q |
434 |
gactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgcagaaaca |
529 |
Q |
| |
|
||||| |||||||| | ||| ||||| |||| ||||||||||| | ||| |||||||| |||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
7926804 |
gacttcaaatgtgaaaattgaggaaccaacatctttaacttatcgaaactaggatgacccaaacgacgatgaatcatatctggagatgcagaaaca |
7926709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 35 - 306
Target Start/End: Original strand, 45184570 - 45184838
Alignment:
| Q |
35 |
tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt |
134 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||| || ||||||||| ||||||||| |||| ||||||||| || | ||||||||| |
|
|
| T |
45184570 |
tcagtgacaccattttgttgcagtgtgtgaggacagctggactgatgtataataccatgagaagccataaaggagttgaatgatgtagaaaaatatt--- |
45184666 |
T |
|
| Q |
135 |
tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt |
234 |
Q |
| |
|
||||||| ||||| | |||| | |||||||| ||| |||| |||||||||| ||||||||| || ||| |||||| ||||||||||||||||||| |
|
|
| T |
45184667 |
tggcattctcactccgtaaaattcgaattgttttaccagattgggtctttatctctgaacaaaacgtttgaaaggcaccaaataattatgaacgatcctt |
45184766 |
T |
|
| Q |
235 |
caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga |
306 |
Q |
| |
|
||||||||| ||||| || |||| ||||||||||| ||| |||| |||||||| |||||||| ||| |||| |
|
|
| T |
45184767 |
caataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtaga |
45184838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 398 - 529
Target Start/End: Original strand, 37980340 - 37980471
Alignment:
| Q |
398 |
acatgtttgccaagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaac |
497 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| | |||||||||||||| || || ||||| || || ||||||||||| | |||||||||||| ||| |
|
|
| T |
37980340 |
acatgtttgccaagctgacatgattcacaatccaatgactttaaatgtgaaaggtgaggaactaatacctttaacttatccaaacttggatgacccaaat |
37980439 |
T |
|
| Q |
498 |
gatgatgaataatatttggagatgcagaaaca |
529 |
Q |
| |
|
|| ||||||| |||| |||||||||||||||| |
|
|
| T |
37980440 |
gacgatgaatgatatctggagatgcagaaaca |
37980471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 107 - 529
Target Start/End: Original strand, 44265566 - 44265987
Alignment:
| Q |
107 |
gagttgaattgtgcataaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaa |
206 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||||| | ||||| | ||| ||| |||||||| |||| |||| | ||||||| ||| || |
|
|
| T |
44265566 |
gagttgaatggtgctgtaaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctt-atctctaaacaaaatgtctgaa |
44265664 |
T |
|
| Q |
207 |
atgcaccacataattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga |
306 |
Q |
| |
|
| |||||| |||||| |||||| ||||||| ||| || |||||| | |||| || |||||||| ||| |||| |||||||| | ||||| ||| |||| |
|
|
| T |
44265665 |
aggcaccaaataattgtgaacggtccttcagtaaagtgatccaaatgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtaga |
44265764 |
T |
|
| Q |
307 |
gggcacatgaataggaccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttg-ttgtgaagagatgtccgaacatgttt |
405 |
Q |
| |
|
||| || |||||||||| | || |||||| ||||||||||| | | ||||||||||| || | || ||| | | ||||| | ||||||||| |
|
|
| T |
44265765 |
caacacccgactaggaccccacacattagaatgaacaatatcaaagggagacttggatcttttgttgggactgcttgggga-agatgctctaacatgttt |
44265863 |
T |
|
| Q |
406 |
gccaagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatga |
505 |
Q |
| |
|
||||| | ||||||||||||||| | ||||| || ||||| |||| ||||| ||||| ||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
44265864 |
cccaagttgacatgactcacaatccaatgacttcaagtgtgaaagttaaggaaccaacacctttaacttatctaaacttggatgacccaaacgacgatga |
44265963 |
T |
|
| Q |
506 |
ataatatttggagatgcagaaaca |
529 |
Q |
| |
|
|| || | |||||||||| ||||| |
|
|
| T |
44265964 |
atcatgtctggagatgcataaaca |
44265987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 398 - 529
Target Start/End: Original strand, 45186907 - 45187038
Alignment:
| Q |
398 |
acatgtttgccaagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaac |
497 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| | |||||||||||||| || || |||| || || ||||||||||| | |||||||||||| |||| |
|
|
| T |
45186907 |
acatgtttgccaagctgacatgattcacaatccaatgactttaaatgtgaaaggtgaggaattaatacctttaacttatccaaacttggatgacccaaac |
45187006 |
T |
|
| Q |
498 |
gatgatgaataatatttggagatgcagaaaca |
529 |
Q |
| |
|
| ||||||| |||| |||||||||||||||| |
|
|
| T |
45187007 |
tacgatgaatgatatctggagatgcagaaaca |
45187038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 403 - 507
Target Start/End: Complemental strand, 8983806 - 8983702
Alignment:
| Q |
403 |
tttgccaagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatga |
502 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||| | | | |||||||||| |||| | || |
|
|
| T |
8983806 |
tttgccaatctaacacgactcacaatcaagagacataaaatgtgacagttgaggaacaaacacttttgacttacccatatttggatgacccaaacaacga |
8983707 |
T |
|
| Q |
503 |
tgaat |
507 |
Q |
| |
|
||||| |
|
|
| T |
8983706 |
tgaat |
8983702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 44265491 - 44265543
Alignment:
| Q |
39 |
cgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaatacca |
91 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| || |||||| | |||||| |
|
|
| T |
44265491 |
cgacgccattttgttgtggtgtgtggggacaactggattgatgtatgatacca |
44265543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 529
Target Start/End: Complemental strand, 38504227 - 38503721
Alignment:
| Q |
23 |
cgatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcat |
122 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||| | |||||| |||| ||||||||| ||||| |
|
|
| T |
38504227 |
cgatgtttcctttcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcag |
38504128 |
T |
|
| Q |
123 |
aaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataatta |
222 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||| | ||| ||| |||||||| ||||||||| ||||||||| ||| ||| ||||| |||||| |
|
|
| T |
38504127 |
aaaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaagacaccaaataattg |
38504028 |
T |
|
| Q |
223 |
tgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaatagga |
322 |
Q |
| |
|
|||||| ||||||| ||| || ||||| || |||| || |||||||| ||| |||| |||||||| | ||||| ||| |||| ||| || ||||| |
|
|
| T |
38504027 |
tgaacggtccttcagtaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtagacatcacccgactagga |
38503928 |
T |
|
| Q |
323 |
ccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgact |
422 |
Q |
| |
|
||||| | ||||||||| ||||||||||| | | ||||||||||| || | || | ||| ||||| | |||||| |||||||| | |||||||| |
|
|
| T |
38503927 |
ccccacacatcagaatgaacaatatcaaagggagacttggatcttttgttgggactgcttggaaaagatgctctaacatgcttgccaagttgacatgact |
38503828 |
T |
|
| Q |
423 |
cacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggagatgc |
522 |
Q |
| |
|
||||||| | ||||| |||||||| ||||| ||||| ||||| ||||||||||| | ||||||||||| |||||| ||||||| |||| |||||||| |
|
|
| T |
38503827 |
cacaatccaatgacttcaaatgtgaaagttgaggaaccaacacctttaacttatcaaaacttggatgactcaaacgacgatgaatcatatccggagatgc |
38503728 |
T |
|
| Q |
523 |
agaaaca |
529 |
Q |
| |
|
||||||| |
|
|
| T |
38503727 |
agaaaca |
38503721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 209 - 529
Target Start/End: Original strand, 32665509 - 32665829
Alignment:
| Q |
209 |
gcaccacataattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagg |
308 |
Q |
| |
|
|||||| |||||| |||| |||| ||||||||||| ||||| || |||| ||||||||||| || |||| |||||||| |||||||| ||| |||| | |
|
|
| T |
32665509 |
gcaccaaataattctgaatgatctttcaataaggtgatccaggtgcatctagagaaatcatcattgaaagtgacataatatttgtatcccaaagtagacg |
32665608 |
T |
|
| Q |
309 |
gcacatgaataggaccccaaatatcagaatggacaatatcaaaagcatgtttggatcttttatttg-tcttgttgtgaagagatgtccgaacatgtttgc |
407 |
Q |
| |
|
|||| || |||||||||||| |||||||||| |||||||| | | | ||| ||||||| | || ||| ||| |||| || |||||||||| |
|
|
| T |
32665609 |
acacacgactaggaccccaaacatcagaatggctgatatcaaagggagacattgattttttattggcactacttg-gaaaagataccctgacatgtttgc |
32665707 |
T |
|
| Q |
408 |
caagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaat |
507 |
Q |
| |
|
|||| | |||||| |||||||| || |||||||||| || || || | || || || ||||||||||| | | |||||||||| |||||| ||||||| |
|
|
| T |
32665708 |
caaggtgacatgattcacaatccagtgactttaaatacgaaagatgagagactaatacctttaacttatccaaaattggatgacccaaacgacgatgaat |
32665807 |
T |
|
| Q |
508 |
aatatttggagatgcagaaaca |
529 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
32665808 |
gatatctggagatgcagaaaca |
32665829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 19549 - 19285
Alignment:
| Q |
24 |
gatgtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcata |
123 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||| | |||||| ||||| ||||||||| ||||| | |
|
|
| T |
19549 |
gatgtttcctttcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaaaagaagccatgaaagagttgaatggtgcaga |
19450 |
T |
|
| Q |
124 |
aaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattat |
223 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||| ||| |||||||| ||||||||| ||||||||| ||| ||| |||||| |||| | |
|
|
| T |
19449 |
aaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataaatga |
19350 |
T |
|
| Q |
224 |
gaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataata |
288 |
Q |
| |
|
||||| ||||||| ||| || ||||| | |||| || |||||||| ||| |||| |||||||| |
|
|
| T |
19349 |
gaacggtccttcagtaaagtgatccagatgcatctagaaaaatcatcaatgaaagtgacataata |
19285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 529
Target Start/End: Original strand, 11076015 - 11076150
Alignment:
| Q |
394 |
ccgaacatgtttgccaagctaacatgactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacct |
493 |
Q |
| |
|
|||||||| ||||||||| | ||| |||||| | | |||| | |||||||||| |||| |||||| || || ||||||||||| |||||| |||||| |
|
|
| T |
11076015 |
ccgaacatatttgccaagttgacaagactcatagtttagagtcgttaaatgtgaaagttctggaaccaatacctttaacttatccagacttaaatgacca |
11076114 |
T |
|
| Q |
494 |
aaacgatgatgaataatatttggagatgcagaaaca |
529 |
Q |
| |
|
|||| | |||||||||||||| ||||| ||||||| |
|
|
| T |
11076115 |
aaacaacgatgaataatatttaaagatgtagaaaca |
11076150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 419 - 529
Target Start/End: Complemental strand, 21292609 - 21292500
Alignment:
| Q |
419 |
gactcacaatcaagagactttaaatgtgacagttgtggaacaaacacttttaacttatctagacttggatgacctaaacgatgatgaataatatttggag |
518 |
Q |
| |
|
||||||||||| | ||||| |||||| | ||||| ||||| |||| ||||||||||| | |||||||||||| |||||| ||||||| |||| |||| |
|
|
| T |
21292609 |
gactcacaatccaatgacttcaaatgtcaaagttgaggaaccaacatctttaacttatcaaaacttggatgacc-aaacgacgatgaatcatatccggag |
21292511 |
T |
|
| Q |
519 |
atgcagaaaca |
529 |
Q |
| |
|
||||||||||| |
|
|
| T |
21292510 |
atgcagaaaca |
21292500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 28123019 - 28122947
Alignment:
| Q |
245 |
atccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcct-aaattagagggcacatga |
316 |
Q |
| |
|
|||||||| |||| ||||| |||||| | | || ||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
28123019 |
atccaagtgcatcttgagagatcatcaaggaaattaacatagtacttgtatcctgaaattagaaggcacatga |
28122947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1290 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1290
Description:
Target: scaffold1290; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 2153 - 2064
Alignment:
| Q |
217 |
taattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||| ||||||||||| ||| |||| |||||||| |||||||| ||| |||| |
|
|
| T |
2153 |
taattatgaacgatccttcaataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtaga |
2064 |
T |
|
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Target: scaffold0175 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 247 - 351
Target Start/End: Complemental strand, 32113 - 32009
Alignment:
| Q |
247 |
ccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatcagaatggacaata |
346 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||||||||||||| ||||| |||| || | | || |||||||||||| |||| |||| |||| | |
|
|
| T |
32113 |
ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaaaacgactaggaccccaaacatcaaaatgaacaaca |
32014 |
T |
|
| Q |
347 |
tcaaa |
351 |
Q |
| |
|
||||| |
|
|
| T |
32013 |
tcaaa |
32009 |
T |
|
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