View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19881_low_10 (Length: 203)
Name: NF19881_low_10
Description: NF19881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19881_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 44191671 - 44191511
Alignment:
| Q |
19 |
actatcgaatgataaatgattagtaaaattaaacctattgttgataggttgagtcccatctaacaatgtctgaactctgatgactttctttaaaaagaac |
118 |
Q |
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| T |
44191671 |
actatcgaatgataaatgattagtaaaatt---------gttgataggttgagtcccatctaacaatgtctgaactctgatgacttactttaaaaagaac |
44191581 |
T |
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| Q |
119 |
aggtacaattgcgacaatatatgctttcaatattttaagccacgaaataagctgttgaatgaggcctttg |
188 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44191580 |
aggtacaattgcgacaatatatgctatcaatattttaagccacgaaataagctgttgaatgaggcctttg |
44191511 |
T |
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Target: chr1; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 44202953 - 44202784
Alignment:
| Q |
19 |
actatcgaatgataaatgattagtaaaattaaacctattgttgataggttgagtcccatctaacaatgtctgaactctgatgactttctttaaaaagaac |
118 |
Q |
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||||| ||||||||||||||||||||||||||| |||| ||||||||||| | | |||||||||| ||||||||||||||| ||||| ||||||||||| |
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| T |
44202953 |
actattgaatgataaatgattagtaaaattaaaactatcgttgataggttaaatgccatctaacagtgtctgaactctgatagctttcattaaaaagaac |
44202854 |
T |
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| Q |
119 |
aggtacaattgcgacaatatatgctttcaatattttaagccacgaaataagctgttgaatgaggcctttg |
188 |
Q |
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|||||||||||||||||| ||||| |||| |||||||| |||||| ||||||| |||||| ||||||| |
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| T |
44202853 |
cggtacaattgcgacaatagatgctatcaaaattttaagtcacgaattaagctgcagaatgatgcctttg |
44202784 |
T |
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