View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19881_low_3 (Length: 411)
Name: NF19881_low_3
Description: NF19881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19881_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 45044027 - 45043657
Alignment:
| Q |
16 |
atcaaaccctaatgaaataaactgataaatcttgagaaaaatcaattaaagcgattaaattgagttattaattgtatacttgtagccnnnnnnntgtcta |
115 |
Q |
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| T |
45044027 |
atcaaaccctaatgaaataaactgataaatcttgagaaaaatcaattaaagcgattaaattgagttattagttgtatacttgtagccaaaaaaatgtcta |
45043928 |
T |
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| Q |
116 |
acattttatgttctgtaattggtctatgcaaatcgatttattgatttgttattattttacttacattttaatcatattattggaattggctttgtagatg |
215 |
Q |
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| T |
45043927 |
acattttatggtctgtaattggtctatgcaaatcgatttattgatttgttaatattttacttacattttaatcatattattggaattggctttgtagatg |
45043828 |
T |
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| Q |
216 |
tttcctttactatcgatgcaacacacggtattattcgaatttctggagcaatagatccaagtaagcttttgaccgaaataacaaaagctgggaaacatgc |
315 |
Q |
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| T |
45043827 |
tttcctttactatcgatgcaacacacggtattattcgaatttctggagcaatagatccaagtaagcttttgaccgaaataacaaaagctgggaaacatgc |
45043728 |
T |
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| Q |
316 |
tgagctcattgctgctaatgttgttggcggcagcagtggaggtggacattctcacaatgaatataatggtaaccacg |
392 |
Q |
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| T |
45043727 |
tgaactcattgctgctaatgttgttggcggcagc------ggtggacattctcacaatgaatataatggtaaccacg |
45043657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 45040102 - 45039999
Alignment:
| Q |
243 |
gtattattcgaatttctggagcaatagatccaagtaagcttttgaccgaaataacaaaagctgggaaacatgctgagctcattgctgctaatgttgttgg |
342 |
Q |
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|||| |||||||||||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| ||||||||| ||||||| ||| ||| |||||| |
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| T |
45040102 |
gtatcattcgaatttctggggcaattgatccaaataagctcttgactgaaataacaaaagctggaaaacatgctagactcattgttgcagatgatgttgg |
45040003 |
T |
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| Q |
343 |
cggc |
346 |
Q |
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|||| |
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| T |
45040002 |
cggc |
45039999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 330
Target Start/End: Original strand, 38345918 - 38346018
Alignment:
| Q |
230 |
gatgcaacacacggtattattcgaatttctggagcaatagatccaagtaagcttttgaccgaaataacaaaagctgggaaacatgctgagctcattgctg |
329 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||| ||||||| |||||||||||||| ||||| || ||||||| |
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| T |
38345918 |
gatgcaacacatggtattattcgaatttctggtgcaatagatccaatcaagcttctgactgaaataaagaaagctgggaaacacgctgaacttattgctg |
38346017 |
T |
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| Q |
330 |
c |
330 |
Q |
| |
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| |
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| T |
38346018 |
c |
38346018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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