View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19881_low_5 (Length: 352)
Name: NF19881_low_5
Description: NF19881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19881_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 206 - 337
Target Start/End: Complemental strand, 7817007 - 7816876
Alignment:
| Q |
206 |
cctttgaagagtgattagtgatgttggaaactattccagcctcaatagtgagtgagttagccattgatgtctttctctctttgaggctcttcttgttcat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7817007 |
cctttgaagagtgattagtgatgttggaaactattccagcctcaatagtgagtgagttagccattgatgtctttctttctttgaggctcttcttgttcat |
7816908 |
T |
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| Q |
306 |
tgtctccttccacttttttatctctacttcct |
337 |
Q |
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| T |
7816907 |
tgtctccttccacttttttatctctacttcct |
7816876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 7797930 - 7797796
Alignment:
| Q |
13 |
aatatttagacaaattcactgattcaaagtatatgtaagttgagagatcatggaatagattttgacaaattcaacgattcatagtatcatttatgtacgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7797930 |
aatatttagacaaattcactgattcaaagtatatgtaagttgagagatcatggaatagattttgacaaattcaacgattcatagtatcatttatgtacgt |
7797831 |
T |
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| Q |
113 |
aactgtaaagattaatttcatcgtatatgtgtgtg |
147 |
Q |
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| T |
7797830 |
aactataaagattaatttcattgtatatgtgtgtg |
7797796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 7817200 - 7817066
Alignment:
| Q |
13 |
aatatttagacaaattcactgattcaaagtatatgtaagttgagagatcatggaatagattttgacaaattcaacgattcatagtatcatttatgtacgt |
112 |
Q |
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| T |
7817200 |
aatatttagacaaattcactgattcaaagtatatgtaagttgagagatcatggaatagattttgacaaattcaacgattcatagtatcatttatgtacgt |
7817101 |
T |
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| Q |
113 |
aactgtaaagattaatttcatcgtatatgtgtgtg |
147 |
Q |
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| T |
7817100 |
aactataaagattaatttcattgtatatgtgtgtg |
7817066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 206 - 337
Target Start/End: Complemental strand, 7797737 - 7797606
Alignment:
| Q |
206 |
cctttgaagagtgattagtgatgttggaaactattccagcctcaatagtgagtgagttagccattgatgtctttctctctttgaggctcttcttgttcat |
305 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
7797737 |
cctttgaagagtgattagtgatgttggaaactattccagccttaatagtgagtgagttagccattgatgtcgttctttctttgaggctcttcttgttcat |
7797638 |
T |
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| Q |
306 |
tgtctccttccacttttttatctctacttcct |
337 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7797637 |
tgtctccttccacttttttatctctacttcct |
7797606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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