View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19881_low_6 (Length: 325)
Name: NF19881_low_6
Description: NF19881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19881_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 41988295 - 41988619
Alignment:
| Q |
1 |
tgactgccatatacgtaggaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctgatggagatgtaactgga |
100 |
Q |
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| T |
41988295 |
tgactgccatatacgtaagaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctgatggagatgtaactgga |
41988394 |
T |
|
| Q |
101 |
atcttttgaccgcacgtgtaaatctcctttatgaaagatatgttatgaaa-------------gatcgaaatcttgacaataacatgacattatcttagt |
187 |
Q |
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| T |
41988395 |
atcttttgaccgcacgtgtaaatctcctttatgaaagatatgttatgagaaggtgtgttgaatgatcgaaatcttgacaataacatgacattatcttagt |
41988494 |
T |
|
| Q |
188 |
atgacactcttttttgtttattgtttt-tcttgacagctgtgatctctatagagcatgaaaagacattgtaacttcttactttgatttttgtatttcatt |
286 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41988495 |
atgacactcttttttgtttattgttttttcttgacagctgtgatccctatagagcatgaaaagacattgtaacttcttactttgatttttgtatttcatt |
41988594 |
T |
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| Q |
287 |
tgattgagtgaaagacattgtaact |
311 |
Q |
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||||||||||||||||||||||||| |
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| T |
41988595 |
tgattgagtgaaagacattgtaact |
41988619 |
T |
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