View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19881_low_9 (Length: 237)

Name: NF19881_low_9
Description: NF19881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19881_low_9
NF19881_low_9
[»] chr7 (1 HSPs)
chr7 (147-212)||(42446614-42446679)
[»] chr6 (3 HSPs)
chr6 (147-225)||(25319060-25319138)
chr6 (147-225)||(26148753-26148831)
chr6 (173-212)||(29145573-29145612)
[»] scaffold0054 (2 HSPs)
scaffold0054 (155-210)||(39561-39617)
scaffold0054 (169-210)||(33225-33266)
[»] chr4 (2 HSPs)
chr4 (155-199)||(9571960-9572004)
chr4 (155-207)||(37898193-37898245)
[»] chr1 (1 HSPs)
chr1 (92-145)||(26684116-26684169)


Alignment Details
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 42446679 - 42446614
Alignment:
Q  147 ctttgtatacaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaaca 212  Q
    ||||||||||||||||| ||  ||| ||||||| ||||||||||||||||||||||||||||||||    
T  42446679 ctttgtatacaaggtaatatctcaagaaccacaatcatatacctcttggtgaaaacaagaaaaaca 42446614  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 25319060 - 25319138
Alignment:
Q  147 ctttgtatacaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattactgat 225  Q
    ||||||||| ||||||| |||| || ||| | ||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  25319060 ctttgtatataaggtaatattcaaaaaacgaaattcatatacctcttggtgaagacaagaaaaacaactagttactgat 25319138  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 26148753 - 26148831
Alignment:
Q  147 ctttgtatacaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaaaaacagctaattactgat 225  Q
    ||||||||| ||||||| |||| || ||| | ||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  26148753 ctttgtatataaggtaatattcaaaaaacgaaattcatatacctcttggtgaagacaagaaaaacaactagttactgat 26148831  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 29145612 - 29145573
Alignment:
Q  173 aaccacattcatatacctcttggtgaaaacaagaaaaaca 212  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  29145612 aaccacaatcatatacctcttggtgataacaagaaaaaca 29145573  T

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Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 39561 - 39617
Alignment:
Q  155 acaaggtaacattc-caataaccacattcatatacctcttggtgaaaacaagaaaaa 210  Q
    ||||||||| |||| ||||||||||  ||||||||||||||||||||||||||||||    
T  39561 acaaggtaatattctcaataaccacgatcatatacctcttggtgaaaacaagaaaaa 39617  T

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Target: scaffold0054; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 33225 - 33266
Alignment:
Q  169 caataaccacattcatatacctcttggtgaaaacaagaaaaa 210  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  33225 caataaccacaatcatatacctcttggtgaaaacatgaaaaa 33266  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 9572004 - 9571960
Alignment:
Q  155 acaaggtaacattccaataaccacattcatatacctcttggtgaa 199  Q
    ||||||||| || |||||||||||||||| |||||||||||||||    
T  9572004 acaaggtaatatcccaataaccacattcacatacctcttggtgaa 9571960  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 37898245 - 37898193
Alignment:
Q  155 acaaggtaacattccaataaccacattcatatacctcttggtgaaaacaagaa 207  Q
    |||||| || || |||||||||||| |||  ||||||||||||||||||||||    
T  37898245 acaaggcaatatcccaataaccacaatcaattacctcttggtgaaaacaagaa 37898193  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 26684116 - 26684169
Alignment:
Q  92 aacacacaaaacacacctctgaaacacagaatactactttggaagatgaaaatc 145  Q
    ||||||||||||||| |  ||||||||||||| |||| || |||||||||||||    
T  26684116 aacacacaaaacacatcattgaaacacagaatcctaccttagaagatgaaaatc 26684169  T

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