View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19882_high_2 (Length: 468)

Name: NF19882_high_2
Description: NF19882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19882_high_2
NF19882_high_2
[»] chr1 (17 HSPs)
chr1 (13-450)||(29202260-29202703)
chr1 (278-387)||(28391410-28391519)
chr1 (350-390)||(18404439-18404479)
chr1 (289-365)||(25463748-25463824)
chr1 (289-365)||(36966625-36966701)
chr1 (289-365)||(40215060-40215136)
chr1 (289-365)||(44094770-44094846)
chr1 (289-364)||(20305048-20305123)
chr1 (295-365)||(37821757-37821827)
chr1 (350-387)||(40214988-40215025)
chr1 (289-362)||(41876359-41876432)
chr1 (319-388)||(51620979-51621048)
chr1 (289-365)||(6883559-6883635)
chr1 (289-365)||(9910210-9910286)
chr1 (350-390)||(16045826-16045866)
chr1 (289-365)||(19015476-19015552)
chr1 (357-389)||(25463674-25463706)
[»] chr8 (16 HSPs)
chr8 (289-365)||(42754959-42755035)
chr8 (290-363)||(32393932-32394005)
chr8 (350-390)||(1645993-1646033)
chr8 (289-365)||(7017782-7017858)
chr8 (350-390)||(32064742-32064782)
chr8 (289-365)||(37985972-37986048)
chr8 (350-389)||(15187558-15187597)
chr8 (350-387)||(24211581-24211618)
chr8 (350-387)||(32393858-32393895)
chr8 (350-387)||(34665382-34665419)
chr8 (289-365)||(1645882-1645958)
chr8 (289-365)||(6108150-6108226)
chr8 (289-365)||(17841767-17841843)
chr8 (350-390)||(17841878-17841918)
chr8 (289-365)||(40780046-40780122)
chr8 (350-390)||(40780157-40780197)
[»] chr3 (21 HSPs)
chr3 (289-365)||(22426261-22426337)
chr3 (289-365)||(33113865-33113941)
chr3 (289-381)||(40327881-40327973)
chr3 (169-268)||(7177183-7177282)
chr3 (278-341)||(9796935-9796998)
chr3 (290-365)||(42297936-42298011)
chr3 (350-390)||(2754714-2754754)
chr3 (315-387)||(7177338-7177410)
chr3 (350-390)||(11347265-11347305)
chr3 (350-389)||(3574555-3574594)
chr3 (350-388)||(42297352-42297390)
chr3 (350-387)||(3456064-3456101)
chr3 (350-387)||(6041884-6041921)
chr3 (350-387)||(37217081-37217118)
chr3 (356-389)||(47402630-47402663)
chr3 (350-387)||(48160905-48160942)
chr3 (289-365)||(3456136-3456212)
chr3 (289-365)||(6041956-6042032)
chr3 (357-389)||(33113791-33113823)
chr3 (289-365)||(34482827-34482903)
chr3 (350-390)||(34482938-34482978)
[»] chr4 (29 HSPs)
chr4 (278-385)||(9111317-9111424)
chr4 (289-365)||(44893130-44893206)
chr4 (289-365)||(44893498-44893574)
chr4 (289-365)||(50156495-50156571)
chr4 (292-365)||(17655502-17655575)
chr4 (289-365)||(7745029-7745105)
chr4 (289-365)||(10442706-10442782)
chr4 (350-390)||(10442817-10442857)
chr4 (289-365)||(21802239-21802315)
chr4 (289-365)||(36073019-36073095)
chr4 (289-365)||(53123103-53123179)
chr4 (350-388)||(4751445-4751483)
chr4 (350-388)||(31078847-31078885)
chr4 (295-365)||(33530611-33530681)
chr4 (350-388)||(33530716-33530754)
chr4 (359-397)||(44893416-44893454)
chr4 (350-387)||(2624837-2624874)
chr4 (350-387)||(22199261-22199298)
chr4 (350-387)||(36072947-36072984)
chr4 (350-387)||(49387916-49387953)
chr4 (289-365)||(4751518-4751594)
chr4 (350-386)||(7745140-7745176)
chr4 (289-365)||(9088942-9089018)
chr4 (350-390)||(21802350-21802390)
chr4 (350-390)||(24128236-24128276)
chr4 (289-365)||(24128311-24128387)
chr4 (350-390)||(24392664-24392704)
chr4 (350-390)||(47290063-47290103)
chr4 (289-365)||(47290138-47290214)
[»] chr6 (16 HSPs)
chr6 (186-268)||(10262062-10262144)
chr6 (289-365)||(17705382-17705458)
chr6 (292-383)||(10261946-10262037)
chr6 (289-365)||(17175938-17176014)
chr6 (289-365)||(33695244-33695320)
chr6 (289-365)||(33696768-33696844)
chr6 (350-389)||(6127273-6127312)
chr6 (355-390)||(18365606-18365641)
chr6 (355-390)||(18370870-18370905)
chr6 (350-389)||(23291112-23291151)
chr6 (350-389)||(28675146-28675185)
chr6 (350-388)||(33695355-33695393)
chr6 (350-388)||(33696695-33696733)
chr6 (350-387)||(17705493-17705530)
chr6 (355-387)||(17176054-17176086)
chr6 (289-365)||(28675220-28675296)
[»] scaffold0178 (2 HSPs)
scaffold0178 (289-365)||(11693-11769)
scaffold0178 (350-387)||(11621-11658)
[»] chr7 (16 HSPs)
chr7 (289-365)||(42611883-42611959)
chr7 (295-365)||(34482907-34482977)
chr7 (293-365)||(30848641-30848713)
chr7 (289-365)||(35444630-35444706)
chr7 (289-365)||(45637784-45637860)
chr7 (350-389)||(15329271-15329310)
chr7 (350-389)||(45637710-45637749)
chr7 (350-388)||(15577878-15577916)
chr7 (350-387)||(3961979-3962016)
chr7 (350-387)||(4974763-4974800)
chr7 (350-387)||(24394972-24395009)
chr7 (350-387)||(42611811-42611848)
chr7 (350-387)||(48880955-48880992)
chr7 (289-365)||(15329345-15329421)
chr7 (355-387)||(20010130-20010162)
chr7 (289-365)||(48880844-48880920)
[»] chr5 (17 HSPs)
chr5 (289-365)||(38899643-38899719)
chr5 (350-390)||(2477633-2477673)
chr5 (289-365)||(2477708-2477784)
chr5 (289-365)||(3362850-3362926)
chr5 (289-365)||(4433924-4434000)
chr5 (289-365)||(11361048-11361124)
chr5 (289-365)||(31640857-31640933)
chr5 (350-389)||(6043539-6043578)
chr5 (350-388)||(3362777-3362815)
chr5 (350-388)||(38899754-38899792)
chr5 (350-387)||(11361159-11361196)
chr5 (350-387)||(12850801-12850838)
chr5 (350-390)||(4892199-4892239)
chr5 (289-365)||(4892274-4892350)
chr5 (289-365)||(12850873-12850949)
chr5 (289-365)||(25398310-25398386)
chr5 (289-341)||(36880240-36880292)
[»] chr2 (14 HSPs)
chr2 (289-365)||(3989148-3989224)
chr2 (350-390)||(9293604-9293644)
chr2 (289-365)||(23267979-23268055)
chr2 (289-365)||(31174751-31174827)
chr2 (289-341)||(43331008-43331060)
chr2 (350-388)||(35160756-35160794)
chr2 (350-395)||(13354838-13354883)
chr2 (350-387)||(21936081-21936118)
chr2 (289-365)||(21936153-21936230)
chr2 (289-365)||(7475425-7475501)
chr2 (289-365)||(9293493-9293569)
chr2 (350-386)||(10661888-10661924)
chr2 (289-365)||(33380279-33380355)
chr2 (289-365)||(35160829-35160905)
[»] scaffold0204 (2 HSPs)
scaffold0204 (289-365)||(4468-4544)
scaffold0204 (350-390)||(4393-4433)
[»] scaffold0096 (2 HSPs)
scaffold0096 (289-365)||(41083-41159)
scaffold0096 (355-390)||(41008-41043)
[»] scaffold0471 (2 HSPs)
scaffold0471 (350-390)||(12839-12879)
scaffold0471 (289-365)||(12914-12990)
[»] scaffold0228 (3 HSPs)
scaffold0228 (289-365)||(8474-8550)
scaffold0228 (289-365)||(16056-16132)
scaffold0228 (289-365)||(26008-26084)
[»] scaffold0085 (1 HSPs)
scaffold0085 (289-365)||(47922-47998)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 29202703 - 29202260
Alignment:
Q  13 aatatatacttcagtgaatgaatctcgaccattatatcctaattagtatttactattttctttttgacccttataannnnnnnnn-catattatttatga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||          ||||||||||||||    
T  29202703 aatatatacttcagtgaatgaatctcgaccattatatcctaattagtatttactattttcttttcgacccttataattttttttttcatattatttatga 29202604  T
Q  112 atgagatttatataaaataagtcataatttattttccnnnnnnngttaactagtacgtaatgctaattacaacgaaatgtgaaatcacgatttcttcaaa 211  Q
    ||| |||||||||||||||| ||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29202603 atgtgatttatataaaataattcataatttattttccaaaaaaagttaactagtacgtaatgctaagtacaacgaaatgtgaaatcacgatttcttcaaa 29202504  T
Q  212 aatgacatggcagaacactatcccttagaaatcagtcgtatttgattaccgtttcattnnnnnnnn-----tacatatgacacaccatcccatgattttc 306  Q
    ||||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||             ||||||||| |||||| ||||| |||| |    
T  29202503 aatgacatggcagaatactatcccttagatttcagtcttatttgattaccgtttcattaaaaaaaaaaaaatacatatgatacaccaccccataatttcc 29202404  T
Q  307 ggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatctttcttgatatatagcactgctctttcttaatttaagtgtca 406  Q
    ||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  29202403 ggccagacataaattttatttgttaacatttattttaacactgtttcgtgataaaatctttcttgatatataggactgctctttcttaatttaagtttca 29202304  T
Q  407 tgccccaaagcaaatattaatttaaaaccagaccacgaatatca 450  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  29202303 tgccccaaaacaaatattaatttaaaaccagaccacgaatatca 29202260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 28391519 - 28391410
Alignment:
Q  278 tacatatgacacaccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatctttcttgatatat 377  Q
    ||||||| ||||||||||||||||||| ||||||  || ||||||||||  |||||||| ||||   ||     |||| |||||||||||||||||||||    
T  28391519 tacatataacacaccatcccatgatttccggccatgcacaaattttattgactaacattaatttcgggaagaaatcgttataaaatctttcttgatatat 28391420  T
Q  378 agcactgctc 387  Q
    ||||||||||    
T  28391419 agcactgctc 28391410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 18404479 - 18404439
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  18404479 tttcttgataaaatctttcttgatatatagcattgctcttt 18404439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 25463824 - 25463748
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  25463824 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaagactatttcttgataaaatct 25463748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 36966625 - 36966701
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  36966625 caccaccccatgatttccggccagactgagattttattggttaacattaatttcaggactatttcttgataaaatct 36966701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 40215136 - 40215060
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  40215136 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaagactatttcttgataaaatct 40215060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 44094846 - 44094770
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| ||||||||| |||| | || | |||| |||||||||||    
T  44094846 caccaccccatgatttccggccagactgagattttattggctaacattaatttcaggattatttcttgataaaatct 44094770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 20305048 - 20305123
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatc 364  Q
    |||||||||||||||||||||||  | || |||||||| ||||||||| |||| | || | |||| ||||||||||    
T  20305048 caccatcccatgattttcggccaagctgagattttattggctaacattaatttcaggattatttcttgataaaatc 20305123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 37821757 - 37821827
Alignment:
Q  295 cccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  37821757 cccatgattttcggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 37821827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 40215025 - 40214988
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  40215025 tttcttgataaaatctttcttgatatatagcattgctc 40214988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 41876359 - 41876432
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaa 362  Q
    ||||| |||||||||||||||||| | || |||||||| | ||||||| |||| | |||| |||| ||||||||    
T  41876359 caccaccccatgattttcggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaa 41876432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 51621048 - 51620979
Alignment:
Q  319 attttatttgctaacatttattttatgactgtttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    ||||||||  |||||||| ||||   |||| |||| | ||||||||||||||||||||||||| ||||||    
T  51621048 attttattgactaacattaatttctggactatttcttaataaaatctttcttgatatatagcattgctct 51620979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 6883635 - 6883559
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  6883635 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 6883559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 9910210 - 9910286
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| |||||| || || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  9910210 caccaccccatgatttccggccatactgagattttattggttaacattaatttcaggactatttcttgataaaatct 9910286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 16045826 - 16045866
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| | ||||||    
T  16045826 tttcttgataaaatctttcttgatatatagcattactcttt 16045866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 19015552 - 19015476
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  19015552 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 19015476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 25463706 - 25463674
Alignment:
Q  357 ataaaatctttcttgatatatagcactgctctt 389  Q
    ||||||||||||||||||||||||| |||||||    
T  25463706 ataaaatctttcttgatatatagcattgctctt 25463674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 42754959 - 42755035
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||||||||||| | || |||||||| | ||||||| |||| |||||| |||| |||||||||||    
T  42754959 caccatcccatgattttcggccaggctgagattttattggttaacattaatttcatgactatttcttgataaaatct 42755035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 32394005 - 32393932
Alignment:
Q  290 accatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaat 363  Q
    |||| ||||||||||||||| |||| || |||||||| ||||||||| |||| | |||| |||| |||||||||    
T  32394005 accaccccatgattttcggctagactgagattttattggctaacattaatttcaagactatttcttgataaaat 32393932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 1645993 - 1646033
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  1645993 tttcttgataaaatctttcttgatatatagcattgctcttt 1646033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 7017782 - 7017858
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||| |||||| |||||||| ||||||||| ||||||  ||  |||| |||||||||||    
T  7017782 caccaccccatgatttccggcccgacagagattttattggctaacattaattttagtacaatttcttgataaaatct 7017858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 32064782 - 32064742
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  32064782 tttcttgataaaatctttcttgatatatagcattgctcttt 32064742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 37985972 - 37986048
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| |||| |||| |||| | |||| |||| |||||||||||    
T  37985972 caccaccccatgatttccggccagactgagattttattggctagcattaatttcaggactatttcttgataaaatct 37986048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 15187597 - 15187558
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctt 389  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  15187597 tttcttgataaaatctttcttgatatatagcattgctctt 15187558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 24211581 - 24211618
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  24211581 tttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 32393895 - 32393858
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  32393895 tttcttgataaaatctttcttgatatatagcattgctc 32393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 34665419 - 34665382
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  34665419 tttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 1645882 - 1645958
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| || |||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  1645882 caccaccccatgatttccgaccaggctgagattttattagctaacattaatttcaagactatttcttgataaaatct 1645958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 6108150 - 6108226
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  6108150 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 6108226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 17841767 - 17841843
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  17841767 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 17841843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 17841878 - 17841918
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  17841878 tttcttgaaaaaatctttcttgatatatagcattgctcttt 17841918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 40780046 - 40780122
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  40780046 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 40780122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 40780157 - 40780197
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  40780157 tttcttgaaaaaatctttcttgatatatagcattgctcttt 40780197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 22426261 - 22426337
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| ||||||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  22426261 caccaccccatgatttccggccagactgaaattttattggctaacattaatttcaagactatttcttgataaaatct 22426337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 33113941 - 33113865
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| ||||||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  33113941 caccaccccatgatttccggccagactgaaattttattggctaacattaatttcaggactatttcttgataaaatct 33113865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 40327973 - 40327881
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatctttcttgatatatagca 381  Q
    ||||| || ||||||| |||||||   || |||||||| ||||||||| |||| | |||  |||| |||||||||||||||||||||||||||    
T  40327973 caccaccctatgatttccggccaggttgagattttattggctaacattaatttcaggacaatttcttgataaaatctttcttgatatatagca 40327881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 268
Target Start/End: Original strand, 7177183 - 7177282
Alignment:
Q  169 taatgctaattacaacgaaatgtgaaatcacgatttcttcaaaaatgacatggcagaacactatcccttagaaatcagtcgtatttgattaccgtttcat 268  Q
    ||||||||  |||| |||||||| ||||||| ||||||||   |||||||| ||| || |||||||||| ||  ||| || |||||||||||||||||||    
T  7177183 taatgctatgtacagcgaaatgtaaaatcacaatttcttctggaatgacatagcacaatactatcccttggatttcaatcttatttgattaccgtttcat 7177282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 9796935 - 9796998
Alignment:
Q  278 tacatatgacacaccatcccatgattttcggccagacagaaattttatttgctaacatttattt 341  Q
    |||||| ||| ||||| |||||||||||||||| |||||| |||||||| ||||||||| ||||    
T  9796935 tacataagacccaccaccccatgattttcggcccgacagagattttattggctaacattaattt 9796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 42298011 - 42297936
Alignment:
Q  290 accatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||| |||||||||| ||||||||| || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  42298011 accaccccatgatttccggccagactgagattttattggctaacattaatttcaggactatttcttgataaaatct 42297936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 2754754 - 2754714
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  2754754 tttcttgataaaatctttcttgatatatagcattgctcttt 2754714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 7177338 - 7177410
Alignment:
Q  315 agaaattttatttgctaacatttattttatgactgtttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||||| ||||| | ||||||| ||||   |||||||| ||||||||||||||||||||| ||| ||||||||    
T  7177338 agaaatattattggttaacattaatttcgggactgttttgtgataaaatctttcttgataaatatcactgctc 7177410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 11347305 - 11347265
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  11347305 tttcttgataaaatctttcttgatatatagcattgctcttt 11347265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Original strand, 3574555 - 3574594
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctt 389  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  3574555 tttcttgataaaatctttcttgatatatagcattgctctt 3574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 42297390 - 42297352
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  42297390 tttcttgataaaatctttcttgatatatagcattgctct 42297352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 3456101 - 3456064
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  3456101 tttcttgataaaatctttcttgatatatagcattgctc 3456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 6041921 - 6041884
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  6041921 tttcttgataaaatctttcttgatatatagcattgctc 6041884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 37217081 - 37217118
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  37217081 tttcttgataaaatctttcttgatatatagcattgctc 37217118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 47402630 - 47402663
Alignment:
Q  356 gataaaatctttcttgatatatagcactgctctt 389  Q
    |||||||||||||||||||||||||| |||||||    
T  47402630 gataaaatctttcttgatatatagcattgctctt 47402663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 48160942 - 48160905
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  48160942 tttcttgataaaatctttcttgatatatagcattgctc 48160905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 3456212 - 3456136
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| | ||||||| |||  | |||| |||| |||||||||||    
T  3456212 caccaccccatgatttccggccagactgagattttattggttaacattaattccaggactatttcttgataaaatct 3456136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 6042032 - 6041956
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||| ||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  6042032 caccaccccatgatttccggtcaggctgagattttattggctaacattaatttcaggactatttcttgataaaatct 6041956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 33113823 - 33113791
Alignment:
Q  357 ataaaatctttcttgatatatagcactgctctt 389  Q
    ||||||||||||||||||||||||| |||||||    
T  33113823 ataaaatctttcttgatatatagcattgctctt 33113791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 34482827 - 34482903
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  34482827 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 34482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 34482938 - 34482978
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  34482938 tttcttgaaaaaatctttcttgatatatagcattgctcttt 34482978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 385
Target Start/End: Complemental strand, 9111424 - 9111317
Alignment:
Q  278 tacatatgacacaccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatctttcttgatatat 377  Q
    ||||||| || || || ||||||||||||||||||  |||||||||||| | |||| || ||||   |||  |||| ||||||||||||||||| |||||    
T  9111424 tacatataacccatcaccccatgattttcggccaggtagaaattttattggttaactttaatttcgagacaatttcttgataaaatctttcttggtatat 9111325  T
Q  378 agcactgc 385  Q
    ||||||||    
T  9111324 agcactgc 9111317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 44893130 - 44893206
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||||||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  44893130 caccatcccatgattttcggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 44893206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 44893574 - 44893498
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||||||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  44893574 caccatcccatgattttcggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 44893498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 50156495 - 50156571
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| ||||||||||| |||| |||||||||||    
T  50156495 caccaccccatgatttccggccaggctgagattttattggttaacattaattttatgactatttcttgataaaatct 50156571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 17655575 - 17655502
Alignment:
Q  292 catcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  17655575 catcccatgatttccggccaggctgagattttattggctaacattaatttcaggactatttcttgataaaatct 17655502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 7745029 - 7745105
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  7745029 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaggactatttcttgataaaatct 7745105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 10442706 - 10442782
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  10442706 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaggactatttcttgataaaatct 10442782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 10442817 - 10442857
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  10442817 tttcttgataaaatctttcttgatatatagcattgctcttt 10442857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 21802239 - 21802315
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| ||||||||| |||| | |||  |||| |||||||||||    
T  21802239 caccaccccatgatttccggccagactgagattttattggctaacattaatttcaggacaatttcttgataaaatct 21802315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 36073095 - 36073019
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  36073095 caccaccccatgatttccggccagactgagattttattggttaacattaatttcaggactatttcttgataaaatct 36073019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 53123179 - 53123103
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  53123179 caccaccccatgatttccggccagactgagattttattggttaacattaatttcaggactatttcttgataaaatct 53123103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 4751483 - 4751445
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  4751483 tttcttgataaaatctttcttgatatatagcattgctct 4751445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 31078847 - 31078885
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  31078847 tttcttgataaaatctttcttgatatatagcattgctct 31078885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 33530611 - 33530681
Alignment:
Q  295 cccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||| ||||||| | ||||||||||| |||||||||  ||| | |||| |||| |||||||||||    
T  33530611 cccatgatttccggccaggctgaaattttattggctaacattagtttcaagactatttcttgataaaatct 33530681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 33530716 - 33530754
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  33530716 tttcttgataaaatctttcttgatatatagcattgctct 33530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 44893454 - 44893416
Alignment:
Q  359 aaaatctttcttgatatatagcactgctctttcttaatt 397  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  44893454 aaaatctttcttgatatatagcattgctctttattaatt 44893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 2624874 - 2624837
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  2624874 tttcttgataaaatctttcttgatatatagcattgctc 2624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 22199298 - 22199261
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  22199298 tttcttgataaaatctttcttgatatatagcattgctc 22199261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 36072984 - 36072947
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  36072984 tttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 49387916 - 49387953
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  49387916 tttcttgataaaatctttcttgatatatagcattgctc 49387953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 4751594 - 4751518
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| || |||||| || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  4751594 caccaccccatgatttccgaccagactgagattttattggttaacattaatttcaggactatttcttgataaaatct 4751518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 7745140 - 7745176
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgct 386  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  7745140 tttcttgataaaatctttcttgatatatagcattgct 7745176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 9089018 - 9088942
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  9089018 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 9088942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 21802350 - 21802390
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||| ||||||||||||||||| ||||||||    
T  21802350 tttcttgataaaatatttcttgatatatagcattgctcttt 21802390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 24128276 - 24128236
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  24128276 tttcttgaaaaaatctttcttgatatatagcattgctcttt 24128236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 24128387 - 24128311
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  24128387 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 24128311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 24392704 - 24392664
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  24392704 tttcttgagaaaatctttcttgatatatagcattgctcttt 24392664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 47290103 - 47290063
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  47290103 tttcttgaaaaaatctttcttgatatatagcattgctcttt 47290063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 47290214 - 47290138
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  47290214 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 47290138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 10262144 - 10262062
Alignment:
Q  186 aaatgtgaaatcacgatttcttcaaaaatgacatggcagaacactatcccttagaaatcagtcgtatttgattaccgtttcat 268  Q
    |||||| |||||| ||||||||| |||||||||||||| || ||||||| || || ||||||| || |||||||| |||||||    
T  10262144 aaatgtaaaatcatgatttcttctaaaatgacatggcacaatactatccattggatatcagtcttacttgattactgtttcat 10262062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 17705382 - 17705458
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||| ||||||||| || |||||||| ||||||||| |||| | |||  |||| |||||||||||    
T  17705382 caccatcccatgatttccggccagactgagattttattggctaacattaatttcaggacaatttcttgataaaatct 17705458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 10262037 - 10261946
Alignment:
Q  292 catcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatctttcttgatatatagcact 383  Q
    ||||| |||||||  ||||| |||||||||||||| ||||||||  ||||   ||||||||||| |||||||| ||||||||| || |||||    
T  10262037 catccaatgatttctggccaaacagaaattttattggctaacatcaatttcgagactgtttcgtaataaaatcgttcttgataaattgcact 10261946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 17175938 - 17176014
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| |||| | |||| |||||||||||    
T  17175938 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcatgattatttcttgataaaatct 17176014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 33695244 - 33695320
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  33695244 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaggactatttcttgataaaatct 33695320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 33696844 - 33696768
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  33696844 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaggactatttcttgataaaatct 33696768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 6127312 - 6127273
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctt 389  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  6127312 tttcttgataaaatctttcttgatatatagcattgctctt 6127273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 18365606 - 18365641
Alignment:
Q  355 tgataaaatctttcttgatatatagcactgctcttt 390  Q
    ||||||||||||||||||||||||||| ||||||||    
T  18365606 tgataaaatctttcttgatatatagcattgctcttt 18365641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 18370870 - 18370905
Alignment:
Q  355 tgataaaatctttcttgatatatagcactgctcttt 390  Q
    ||||||||||||||||||||||||||| ||||||||    
T  18370870 tgataaaatctttcttgatatatagcattgctcttt 18370905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Original strand, 23291112 - 23291151
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctt 389  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  23291112 tttcttgataaaatctttcttgatatatagcattgctctt 23291151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 28675185 - 28675146
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctt 389  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  28675185 tttcttgataaaatctttcttgatatatagcattgctctt 28675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 33695355 - 33695393
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  33695355 tttcttgataaaatctttcttgatatatagcattgctct 33695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 33696733 - 33696695
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  33696733 tttcttgataaaatctttcttgatatatagcattgctct 33696695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 17705493 - 17705530
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  17705493 tttcttgataaaatctttcttgatatatagcattgctc 17705530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 17176054 - 17176086
Alignment:
Q  355 tgataaaatctttcttgatatatagcactgctc 387  Q
    ||||||||||||||||||||||||||| |||||    
T  17176054 tgataaaatctttcttgatatatagcattgctc 17176086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 28675296 - 28675220
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||  |||| |||||||||||    
T  28675296 caccaccccatgatttccggccaggctgagattttattagctaacattaatttcaggacaatttcttgataaaatct 28675220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 11769 - 11693
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||||||||||| | || |||||||| | ||||||| |||| |||||| |||| |||||||||||    
T  11769 caccaccccatgattttcggccaggctgagattttattggttaacattaatttcatgactatttcttgataaaatct 11693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 11658 - 11621
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  11658 tttcttgataaaatctttcttgatatatagcattgctc 11621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 42611959 - 42611883
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||| ||||| ||||||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  42611959 caccaccccatgatttccggtcagactgaaattttattggctaacattaatttcaagactatttcttgataaaatct 42611883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 34482977 - 34482907
Alignment:
Q  295 cccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||| ||||||||| || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  34482977 cccatgatttccggccagactgagattttattggctaacattaatttcaggactatttcttgataaaatct 34482907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 30848713 - 30848641
Alignment:
Q  293 atcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||| ||||||||| || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  30848713 atcccatgatttccggccagactgagattttattggttaacattaatttcaggactatttcttgataaaatct 30848641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 35444706 - 35444630
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||||||||||| | || |||||||| | ||||||| |||| |  ||| |||| |||||||||||    
T  35444706 caccatcccatgattttcggccaggctgagattttattggttaacattaatttcagaactatttcttgataaaatct 35444630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 45637860 - 45637784
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| |||| |||| |||| | |||| |||| |||||||||||    
T  45637860 caccaccccatgatttccggccagactgagattttattggctagcattaatttcaggactatttcttgataaaatct 45637784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 15329310 - 15329271
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctt 389  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  15329310 tttcttgataaaatctttcttgatatatagcattgctctt 15329271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Complemental strand, 45637749 - 45637710
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctt 389  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  45637749 tttcttgataaaatctttcttgatatatagcattgctctt 45637710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 15577878 - 15577916
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  15577878 tttcttgataaaatctttcttgatatatagcattgctct 15577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 3962016 - 3961979
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  3962016 tttcttgataaaatctttcttgatatatagcattgctc 3961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 4974763 - 4974800
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  4974763 tttcttgataaaatctttcttgatatatagcattgctc 4974800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 24395009 - 24394972
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  24395009 tttcttgataaaatctttcttgatatatagcattgctc 24394972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 42611848 - 42611811
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  42611848 tttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 48880955 - 48880992
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  48880955 tttcttgataaaatctttcttgatatatagcattgctc 48880992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 15329421 - 15329345
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || ||||||||  |||||||| |||| | |||| |||| |||||||||||    
T  15329421 caccaccccatgatttccggccagtctgagattttattgactaacattaatttcaagactatttcttgataaaatct 15329345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 20010130 - 20010162
Alignment:
Q  355 tgataaaatctttcttgatatatagcactgctc 387  Q
    ||||||||||||||||||||||||||| |||||    
T  20010130 tgataaaatctttcttgatatatagcattgctc 20010162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 48880844 - 48880920
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  48880844 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 48880920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 38899643 - 38899719
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||||||||||||| || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  38899643 caccaccccatgattttcggccagactgagattttattggttaacattaatttcaggactatttcttgataaaatct 38899719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 2477673 - 2477633
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  2477673 tttcttgataaaatctttcttgatatatagcattgctcttt 2477633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 2477784 - 2477708
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | |||||||||||  |||||||| |||| | |||| |||| |||||||||||    
T  2477784 caccaccccatgatttccggccaggctgaaattttattgactaacattaatttcaagactatttcttgataaaatct 2477708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 3362926 - 3362850
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  3362926 caccaccccatgatttccggccagactgagattttattggttaacattaatttcaggactatttcttgataaaatct 3362850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 4433924 - 4434000
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||| ||||||||| || |||||||| | ||||||| |||| |  ||| |||| |||||||||||    
T  4433924 caccatcccatgatttccggccagactgagattttattggttaacattaatttcagaactatttcttgataaaatct 4434000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 11361048 - 11361124
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  11361048 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaggactatttcttgataaaatct 11361124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 31640857 - 31640933
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| |||||  |||| |||||||||||    
T  31640857 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcatgacaatttcttgataaaatct 31640933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Original strand, 6043539 - 6043578
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctt 389  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  6043539 tttcttgataaaatctttcttgatatatagcattgctctt 6043578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 3362815 - 3362777
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  3362815 tttcttgataaaatctttcttgatatatagcattgctct 3362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 38899754 - 38899792
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  38899754 tttcttgataaaatctttcttgatatatagcattgctct 38899792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 11361159 - 11361196
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  11361159 tttcttgataaaatctttcttgatatatagcattgctc 11361196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 12850838 - 12850801
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  12850838 tttcttgataaaatctttcttgatatatagcattgctc 12850801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 4892239 - 4892199
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  4892239 tttcttgaaaaaatctttcttgatatatagcattgctcttt 4892199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 4892350 - 4892274
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  4892350 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 4892274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 12850949 - 12850873
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  12850949 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 12850873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 25398386 - 25398310
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  25398386 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 25398310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 36880240 - 36880292
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattt 341  Q
    ||||||||||| |||| || |||||| ||||||||||| ||||||||| ||||    
T  36880240 caccatcccataatttccgaccagactgaaattttattggctaacattaattt 36880292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 3989224 - 3989148
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  3989224 caccaccccatgatttccggccagactgagattttattggctaacattaatttcaagactatttcttgataaaatct 3989148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 9293604 - 9293644
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  9293604 tttcttgataaaatctttcttgatatatagcattgctcttt 9293644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 23267979 - 23268055
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||||| || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  23267979 caccaccccatgatttccggccagactgagattttattggttaacattaatttcaggactatttcttgataaaatct 23268055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 31174751 - 31174827
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||| ||||| || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  31174751 caccaccccatgatttccggtcagactgagattttattggctaacattaatttcaggactatttcttgataaaatct 31174827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 43331060 - 43331008
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattt 341  Q
    ||||| |||||||||| ||||| ||||||||||||||| ||||||||| ||||    
T  43331060 caccaccccatgatttccggcccgacagaaattttattggctaacattaattt 43331008  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 35160794 - 35160756
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctct 388  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  35160794 tttcttgataaaatctttcttgatatatagcattgctct 35160756  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 13354883 - 13354838
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctctttcttaa 395  Q
    |||| |||||||||||||||||||||||| || |||||||| ||||    
T  13354883 tttcttgataaaatctttcttgatatataacattgctctttattaa 13354838  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 21936118 - 21936081
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctc 387  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  21936118 tttcttgataaaatctttcttgatatatagcattgctc 21936081  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 21936230 - 21936153
Alignment:
Q  289 caccatcccatgattttcggccagac-agaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | ||| |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  21936230 caccaccccatgatttccggccaggctagagattttattggctaacattaatttcaagactatttcttgataaaatct 21936153  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 7475425 - 7475501
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  7475425 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 7475501  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 9293493 - 9293569
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||  |||| |||||||||||    
T  9293493 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaggacaatttcttgataaaatct 9293569  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 10661924 - 10661888
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgct 386  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  10661924 tttcttgataaaatctttcttgatatatagcattgct 10661888  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 33380355 - 33380279
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  33380355 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 33380279  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 35160905 - 35160829
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  35160905 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 35160829  T

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Target: scaffold0204 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 4544 - 4468
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||||||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  4544 caccaccccatgattttcggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 4468  T

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Target: scaffold0204; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 4433 - 4393
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  4433 tttcttgaaaaaatctttcttgatatatagcattgctcttt 4393  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 41159 - 41083
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| ||||||||| |||| | |||| |||| |||||||||||    
T  41159 caccaccccatgatttccggccaggctgagattttattggctaacattaatttcaagactatttcttgataaaatct 41083  T

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Target: scaffold0096; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 41043 - 41008
Alignment:
Q  355 tgataaaatctttcttgatatatagcactgctcttt 390  Q
    ||||||||||||||||||||||||||| ||||||||    
T  41043 tgataaaatctttcttgatatatagcattgctcttt 41008  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 12879 - 12839
Alignment:
Q  350 tttcgtgataaaatctttcttgatatatagcactgctcttt 390  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  12879 tttcttgaaaaaatctttcttgatatatagcattgctcttt 12839  T

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Target: scaffold0471; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 12990 - 12914
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  12990 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 12914  T

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Target: scaffold0228 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 8550 - 8474
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||| ||||||| | || |||||||| | ||||||| |||| |  ||| |||| |||||||||||    
T  8550 caccatcccatgatttccggccagcctgagattttattggttaacattaatttcagaactatttcttgataaaatct 8474  T

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Target: scaffold0228; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 16132 - 16056
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||| ||||||| | || |||||||| | ||||||| |||| |  ||| |||| |||||||||||    
T  16132 caccatcccatgatttccggccagcctgagattttattggttaacattaatttcagaactatttcttgataaaatct 16056  T

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Target: scaffold0228; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 26084 - 26008
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    |||||||||||||||| ||||||| | || |||||||| | ||||||| |||| |  ||| |||| |||||||||||    
T  26084 caccatcccatgatttccggccagcctgagattttattggttaacattaatttcagaactatttcttgataaaatct 26008  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 47998 - 47922
Alignment:
Q  289 caccatcccatgattttcggccagacagaaattttatttgctaacatttattttatgactgtttcgtgataaaatct 365  Q
    ||||| |||||||||| ||||||| | || |||||||| | ||||||| |||| | |||| |||| |||||||||||    
T  47998 caccaccccatgatttccggccaggctgagattttattggttaacattaatttcaggactatttcttgataaaatct 47922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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