View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19882_low_1 (Length: 507)
Name: NF19882_low_1
Description: NF19882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19882_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 4636063 - 4635593
Alignment:
| Q |
17 |
aaaattcagcaaattcgtttaaccacttcaagcaaccagctgagtcgtattggctcttatctgtagtttcatattttgttaaataaattacactgcatcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
4636063 |
aaaattcagcaaattcgtttaaccacttcaagcaaccagctgagtcatattggctcttatctgtagtttcatattttgttaagtaaattacattgcatcc |
4635964 |
T |
|
| Q |
117 |
caatgggaaattcccagggatcatgagcgtgcgtgcacctagatcaatcaactcctgtgaagacataaaatagaaaattaagtatgcttggaaagttgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4635963 |
caatgggaaattcccagggatcatgagcgtgcgtgcacctagatcaatcaactcctgtgaagacataaaatagaaaattaagtatgcttggaaagttgaa |
4635864 |
T |
|
| Q |
217 |
attcgaataatagtaatgcagacagatattgcttcatataatactataatcttacattgattgctgaagtgattgcattgattacatgtggcacgtatgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4635863 |
attcgaataatagtaatgcagacagatattgcttcatataa---tataatcttacattgattgctgaagtgattgcactgattacatgtggcacgtatgt |
4635767 |
T |
|
| Q |
317 |
tttaatctctactatgctccttcgtataaataaaggataattgaagtcgttacctccaatctctcccataagaaataatgagtttgcaagaacttcatgg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4635766 |
tttaatctctactatgctccttcgtataaataaaggataattgaagtcgttacctccgatctctcccataagaaataatgagtttgcaaaaacttcatgg |
4635667 |
T |
|
| Q |
417 |
cagtctgcaagattagacctcaattcagtacttttactaaattcaattatgttaatttgttgatccattttgtc |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4635666 |
cagtctgcaagattagacctcaattcagtaattttactaaattcaattatgttaatttgttgatccattttgtc |
4635593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 4659220 - 4659044
Alignment:
| Q |
17 |
aaaattcagcaaattcgtttaaccacttcaagcaaccagctgagtcgtattggctcttatctgtagtttcatattttgttaaataaattacactgcatcc |
116 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| |||||| |||||| ||||||| || |||||||| ||||||||| | | |||| ||||| |
|
|
| T |
4659220 |
aaaattcagaaaattcatttaaccacttcaagcaaccaaatgagtcatattggttcttatccgtggtttcatacgttgttaaatggactgcactacatcc |
4659121 |
T |
|
| Q |
117 |
caatgggaaattcccagggatcatgagcgtgcgtgcacctagatcaatcaactcctgtgaagacataaaatagaaaa |
193 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4659120 |
caatgggaaatttccagggaccataagcgtgcgtgcccctagatcaatcaactcctgcgaagacataaaatacaaaa |
4659044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 262 - 425
Target Start/End: Complemental strand, 4658969 - 4658806
Alignment:
| Q |
262 |
ataatcttacattgattgctgaagtgattgcattgattacatgtggcacgtatgttttaatctctactatgctccttcgtataaataaaggataattgaa |
361 |
Q |
| |
|
||||||||||||| |||||| |||| |||||||||||||||||||| || ||| ||||| || | ||||||| ||||||| ||||||||||||||| |
|
|
| T |
4658969 |
ataatcttacattaattgctaaagttattgcattgattacatgtggtacatattctttaagctttgttatgctctgtcgtatatgtaaaggataattgaa |
4658870 |
T |
|
| Q |
362 |
gtcgttacctccaatctctcccataagaaataatgagtttgcaagaacttcatggcagtctgca |
425 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
4658869 |
gtcgttgcctccaatctcccccacaagaaataatgactttccaagaacttcatggcaggctgca |
4658806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University