View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19883_high_10 (Length: 222)
Name: NF19883_high_10
Description: NF19883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19883_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 24524350 - 24524150
Alignment:
| Q |
1 |
tagatttttacgagccttcaatccacaattcctccaaacttggaaataacttcctgcattcattggcacgatactgcatccaaatttatttctgatatta |
100 |
Q |
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| T |
24524350 |
tagatttttacgagccttcaatccacaattcctccaaacttggaaataacttcctgcattcattggcacgatactgcatccaaatttatttctgatatta |
24524251 |
T |
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| Q |
101 |
cgaaaattcccctcgtcttacattcaaccattcaggatattgaaacggacaagatctcgcttgagattttgtcttctaagttctgttagatgcatgcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
24524250 |
cgaaaattcccctcgtcttacattcaaccattcaggatattgaaacggacaagatctcgcttgagattttgtcttctaatttctgttagatgaatgcttc |
24524151 |
T |
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| Q |
201 |
a |
201 |
Q |
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| |
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| T |
24524150 |
a |
24524150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 24524090 - 24524053
Alignment:
| Q |
166 |
attttgtcttctaagttctgttagatgcatgcttcaac |
203 |
Q |
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| T |
24524090 |
attttgtcttctaagttctgttagatgcatgcttcaac |
24524053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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