View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19883_high_4 (Length: 425)
Name: NF19883_high_4
Description: NF19883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19883_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 12061619 - 12062008
Alignment:
| Q |
17 |
atgttaatcatgtgtcaatgcccattagttgaaaatgcgaataacatatcttaagttggtttagtggtgttggcttaaaatcttagagtgtgttaggtct |
116 |
Q |
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| T |
12061619 |
atgtcaatcatgtgtcaatgcacattagttgaaaatgcgaataacatatcttaagttggtttagtggtgttggcttaaaatcttagagtgtgttaggtct |
12061718 |
T |
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| Q |
117 |
caattttgatttttgatttaccaatttcgatggatttgattggcttgttnnnnnnnnnnctaataaaggtatcaatgttggtaatcctacatcaatatta |
216 |
Q |
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| T |
12061719 |
cgattttgatttttgatttaccaatttcgatggatttgattggcttgttaaaaaaaaaactaataaaggtatcaatgttggcaatcctacatcaatatta |
12061818 |
T |
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| Q |
217 |
acagaattgatgagaggaaagttgaaaaaactgatggggagatgttgattccttcaacatccctcagttggtgagagtgaaacaatctcagccaccaaaa |
316 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12061819 |
acacaattgataagaggaaagttgaaaaaactgatggggagatgttgattccttcaacatccctcagttggtgagagtgaaacaatctcagccaccaaaa |
12061918 |
T |
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| Q |
317 |
gcatgtaagaggccatgacctatctctgaattgaattgtatcttttagaccgacactagaattccaaatgtatctttgttgacgttgatgg |
407 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12061919 |
gcatgtaaga-gccatgacctagctctgaattgaattgtatcttttagaccgacactagaattctaaatgtatctttgttgacgttgatgg |
12062008 |
T |
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