View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19883_low_3 (Length: 451)
Name: NF19883_low_3
Description: NF19883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19883_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 189 - 395
Target Start/End: Complemental strand, 39336175 - 39335971
Alignment:
| Q |
189 |
gagaaattgattgaatgcacaacatgatatgaagtaaaataactaagcagggaaaagagatgaggaaccaaaggtacctatttggtgcaaaaatcatctt |
288 |
Q |
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| T |
39336175 |
gagaaattgattgaatgcacaacatgatatgaagtaaaataactaagcagggaaaagagatgaggaaccaaaggtacctatttggtgcaaaaatcatctt |
39336076 |
T |
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| Q |
289 |
cagtttcttaaatgtctctttcatcccatccaaatcattaaacatacgtcctttctttcgaggaaactaaaacagtgaattacacgagcttcttgtgatg |
388 |
Q |
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| T |
39336075 |
cagtttcttaaatgtctctttcatcccacccaaatcattaaacatacgtcctttctttcgaggaaactaaaaca--gaattacacgagcttcttgtgatg |
39335978 |
T |
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| Q |
389 |
tgcaaag |
395 |
Q |
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||||||| |
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| T |
39335977 |
tgcaaag |
39335971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 39336305 - 39336187
Alignment:
| Q |
29 |
actcaaatccacgctggcatcaatacgtctaccctttgcaagagttttcaatattttaacacggtcgtcctcgtccgggcttggaagagaaacataatga |
128 |
Q |
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| T |
39336305 |
actcaaatccacgctggcatcaatatgtctaccctttgcaagagttttcaatattttaacacggtcgtcctcgtccgggcttggaagagaaacataatga |
39336206 |
T |
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| Q |
129 |
agtttaccaaatctaccat |
147 |
Q |
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| T |
39336205 |
agtttaccaaatctaccat |
39336187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 266
Target Start/End: Original strand, 7304835 - 7304999
Alignment:
| Q |
100 |
cgtccgggcttggaagagaaacataatgaagtttaccaaatctaccatgtcgtaagagagcagggtccatcgcctcaggcctgcaaaacgagaaattgat |
199 |
Q |
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| T |
7304835 |
cgtctgggcttggaagagaaatataaatatgattaccaaatctacccggacgtaggacagctttgtccatctccaaaggcctgtaaaatgaggaattgag |
7304934 |
T |
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| Q |
200 |
tgaatgcacaacatgatatgaagtaaaataactaagcagggaaaagagatgaggaaccaaaggtacc |
266 |
Q |
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| T |
7304935 |
tgaat--acaatatgatgtgaagtaaaataactaatcaggaaatacagatgatgaataaaaggtacc |
7304999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 270
Target Start/End: Original strand, 7295606 - 7295775
Alignment:
| Q |
99 |
tcgtccgggcttggaagagaaacataatgaagtttaccaaatctaccatgtcgtaagagagcagggtccatcgcctcaggcctgcaaaacgagaaattga |
198 |
Q |
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||||| ||||||||||||| | || | ||| |||||||||||||| | | || ||||||| ||||||| ||||||||||| ||||||| ||||||| |
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| T |
7295606 |
tcgtctgggcttggaagagggatatgaataagattaccaaatctacccagccttaggagagcactgtccatcacctcaggcctggaaaacgaaaaattga |
7295705 |
T |
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| Q |
199 |
ttgaatgcacaacatgatatgaagtaaaataactaagcagggaaaagagatgaggaaccaaaggtacctatt |
270 |
Q |
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|||| || | || | | ||||||||||||||||| || || ||||| || ||||||||| |||||||| |
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| T |
7295706 |
gtgaa--cagagcaaggtgtgaagtaaaataactaatcatcaaatagagacgaagaaccaaagttacctatt |
7295775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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