View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19883_low_6 (Length: 371)
Name: NF19883_low_6
Description: NF19883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19883_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 55173667 - 55174009
Alignment:
| Q |
13 |
tcatcatttggataatttttgacacgtatgctttcatgtgtttcttgtagggttcattgtcagagcggaatatgatccctggaacctctcttagccaata |
112 |
Q |
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| T |
55173667 |
tcatcatttggataatttttgacacgtatgctttcatgtatttcttgtagggttcattgtcagagcggaatatgatccctggaacctctcttagccaata |
55173766 |
T |
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| Q |
113 |
tggaagtcctctgatttatgaaagtattgagagggttagaaagaatagtaatgtataaagctaggttagaagaagcctcccacacatacatacccgtggt |
212 |
Q |
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| T |
55173767 |
tggaagtcctctgatttatgaaagtattgagagggttagaaagaatagtgatgtataaaactaggttagaagaagcctcccacacatacatacccgtggt |
55173866 |
T |
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| Q |
213 |
tccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaa |
312 |
Q |
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| T |
55173867 |
tccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaa |
55173966 |
T |
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| Q |
313 |
gttgaactgcataacgtttgataaacaaattaagtttacaatc |
355 |
Q |
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| T |
55173967 |
attgaactgcataacgtttgataaacaaattaagtttacaatc |
55174009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 27720705 - 27720600
Alignment:
| Q |
194 |
acacatacatacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcacca |
293 |
Q |
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| T |
27720705 |
acacacacatacccgtgattccattcagcttggatgaaagggccaattctaagggtaacatacattcctttctcttgtacaagcttaaggaatttcacca |
27720606 |
T |
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| Q |
294 |
aatcat |
299 |
Q |
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|||||| |
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| T |
27720605 |
aatcat |
27720600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 27720854 - 27720793
Alignment:
| Q |
63 |
ggttcattgtcagagcggaatatgatccctggaacctctcttagccaatatggaagtcctct |
124 |
Q |
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|||||||||| ||| ||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
27720854 |
ggttcattgttagaacggaatatgatgtcagggacctctcttagccaatatggaagtcctct |
27720793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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