View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19883_low_7 (Length: 246)

Name: NF19883_low_7
Description: NF19883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19883_low_7
NF19883_low_7
[»] scaffold2079 (1 HSPs)
scaffold2079 (10-229)||(96-312)
[»] chr7 (2 HSPs)
chr7 (61-221)||(6241962-6242124)
chr7 (10-43)||(6241912-6241945)
[»] chr2 (7 HSPs)
chr2 (64-131)||(15641840-15641907)
chr2 (177-216)||(10850715-10850754)
chr2 (177-216)||(10878229-10878268)
chr2 (78-128)||(15622006-15622057)
chr2 (78-128)||(15643846-15643897)
chr2 (78-128)||(15652896-15652947)
chr2 (61-131)||(43724873-43724943)
[»] chr3 (1 HSPs)
chr3 (178-216)||(16724110-16724148)
[»] chr1 (1 HSPs)
chr1 (67-131)||(10682669-10682732)


Alignment Details
Target: scaffold2079 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 96 - 312
Alignment:
Q  10 agatgaagaagaagttgagtagaagataaaagagnnnnnnnnnccattcggtgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaaga 109  Q
    |||||||||||||||| |||||||||||||||||           || |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  96 agatgaagaagaagttaagtagaagataaaagagaaaaaaaa---atccggtgtagcaaatcaattttgtaggaaaacctctttgaagtttggagaaaga 192  T
Q  110 gatagtctcttgcaaaataacatcgatnnnnnnngtgaatataaaagaatattttggaacgcagacactacttttttgcaatattaagatagcctactat 209  Q
     |||||||||||||||||||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  193 aatagtctcttgcaaaataacatggataaaaaaaatgaatataaaagaatattttggaacgcaggcactacttttttgcaatattaagatagcctactat 292  T
Q  210 acttaatcgggtagaatttt 229  Q
    ||||||||||||||||||||    
T  293 acttaatcgggtagaatttt 312  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 6241962 - 6242124
Alignment:
Q  61 tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgat--nnnnnnngtgaatataaaagaa 158  Q
    ||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||| | ||||         |||||| ||||||||    
T  6241962 tgtagcaaatcaattttttaagaaaacctctttgaagtttggagaaagagatagtctcttgcaaaataataacgataaaaaaaaagtgaatgtaaaagaa 6242061  T
Q  159 tattttggaacgcagacactacttttttgcaatattaagatagcctactatacttaatcgggt 221  Q
    ||||||| ||||  | ||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  6242062 tattttgaaacgtgggcactacttttttgcaatattaagttagtctactatacttaaccgggt 6242124  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 6241912 - 6241945
Alignment:
Q  10 agatgaagaagaagttgagtagaagataaaagag 43  Q
    |||||||||||||||| |||||||||||||||||    
T  6241912 agatgaagaagaagttaagtagaagataaaagag 6241945  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 15641840 - 15641907
Alignment:
Q  64 agcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 131  Q
    ||||||| |||| ||||||||||| ||||||||||| |||| ||||||  | ||||||||||||||||    
T  15641840 agcaaataaattctgtaggaaaacatctttgaagcttggaggaagagaacgcctcttgcaaaataaca 15641907  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 10850754 - 10850715
Alignment:
Q  177 ctacttttttgcaatattaagatagcctactatacttaat 216  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10850754 ctacctttttgcaatattaagatagcttactatacttaat 10850715  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 10878268 - 10878229
Alignment:
Q  177 ctacttttttgcaatattaagatagcctactatacttaat 216  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10878268 ctacctttttgcaatattaagatagcttactatacttaat 10878229  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 15622006 - 15622057
Alignment:
Q  78 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 128  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15622006 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15622057  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 15643846 - 15643897
Alignment:
Q  78 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 128  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15643846 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15643897  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 15652896 - 15652947
Alignment:
Q  78 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 128  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15652896 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15652947  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 43724943 - 43724873
Alignment:
Q  61 tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 131  Q
    |||||||||| | |||||  ||||||||| ||| ||| | |||||||||||  ||||||||||||||||||    
T  43724943 tgtagcaaataatttttgcgggaaaacctatttaaagtttggagaaagagaacgtctcttgcaaaataaca 43724873  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 16724110 - 16724148
Alignment:
Q  178 tacttttttgcaatattaagatagcctactatacttaat 216  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  16724110 tacttttttgcaatattaagatagtttactatacttaat 16724148  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 10682732 - 10682669
Alignment:
Q  67 aaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 131  Q
    |||| |||||||||| |||| |||||||||||| |||||||||||   | |||||||||||||||    
T  10682732 aaataaattttgtag-aaaatctctttgaagcttggagaaagagaacatgtcttgcaaaataaca 10682669  T

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