View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19884_high_2 (Length: 477)

Name: NF19884_high_2
Description: NF19884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19884_high_2
NF19884_high_2
[»] chr2 (3 HSPs)
chr2 (135-364)||(25226215-25226449)
chr2 (16-114)||(25226443-25226541)
chr2 (237-324)||(32266674-32266761)
[»] chr5 (5 HSPs)
chr5 (293-364)||(38123900-38123971)
chr5 (226-298)||(38115747-38115820)
chr5 (410-455)||(38123797-38123842)
chr5 (16-115)||(38115891-38115990)
chr5 (135-220)||(38124026-38124111)
[»] chr7 (2 HSPs)
chr7 (238-284)||(43721981-43722027)
chr7 (1-42)||(43721769-43721810)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 135 - 364
Target Start/End: Complemental strand, 25226449 - 25226215
Alignment:
Q  135 cactgatattgagtcaaattagagtgaatcctatcagtttaatgtactgttggacaacattaaactcaacaaataagaaaagaggtgattatgaaaagaa 234  Q
    |||||||  ||||| || || |||||||||||| |||||||||||  ||||||| ||||||||| |||   ||||| | |||||||  |  ||||||| |    
T  25226449 cactgatgatgagtaaatttcgagtgaatcctaacagtttaatgttttgttggaaaacattaaattcacagaataatagaagaggtagtggtgaaaagca 25226350  T
Q  235 ttgggcacagc-----catgtgagcttactataactatcaaacaggaacggaaaattttcttcaaaaagtaatttggcaaatgtttctttttcaatcatc 329  Q
    |||| ||||||     |||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  25226349 ttggccacagcactgccatgtgaggttactataactatcaaacaggaatggaaaaatttctttaaaaagtaatttggcaaatgtttctttttcaatcatc 25226250  T
Q  330 aaaagaatttaagggaacacaagtaaattataaaa 364  Q
    || |||| ||||||||||||||||||||| |||||    
T  25226249 aagagaagttaagggaacacaagtaaattttaaaa 25226215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 25226541 - 25226443
Alignment:
Q  16 attcagcttgcagatggtcttactacaaagcaaacaattaattgctacacaattttaagcggacaaaagcaatcctggcagcacattcagcgcactgat 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||| |||||||    
T  25226541 attcagcttgcagatggtcttactacaaagaaaacaattaattgctacacaatttcaagctgacagaagcaatcctagcagcacattcagcacactgat 25226443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 32266674 - 32266761
Alignment:
Q  237 gggcacagccatgtgagcttactataactatcaaacaggaacggaaaattttcttcaaaaagtaatttggcaaatgtttctttttcaa 324  Q
    ||||||| |||||||||| || |||||||||||||||||||| |||||  |||| ||||||||||||||| |||| ||||||| ||||    
T  32266674 gggcacaaccatgtgagcgtagtataactatcaaacaggaacagaaaaaattctccaaaaagtaatttggaaaatctttctttatcaa 32266761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 38123971 - 38123900
Alignment:
Q  293 aaaaagtaatttggcaaatgtttctttttcaatcatcaaaagaatttaagggaacacaagtaaattataaaa 364  Q
    |||||||||||||| |||||| ||||| ||||||||||| |||| ||||||||||||| ||||||| |||||    
T  38123971 aaaaagtaatttggaaaatgtctctttctcaatcatcaagagaagttaagggaacacatgtaaattttaaaa 38123900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 38115820 - 38115747
Alignment:
Q  226 tgaaaagaattgggcacagccatgtgagcttactataactatcaaac-aggaacggaaaattttcttcaaaaag 298  Q
    ||||||| | ||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  38115820 tgaaaagcaatgggcactgccatgtgagcttaccataactatcaaactaggaacagaaaattttcttgaaaaag 38115747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 455
Target Start/End: Complemental strand, 38123842 - 38123797
Alignment:
Q  410 tttattgtggcattttcttgaaaacggtgataaagtaacaataccc 455  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  38123842 tttattgtggctttttcttgaaaacggtgataaagtaacaataccc 38123797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 38115990 - 38115891
Alignment:
Q  16 attcagcttgcagatggtcttactacaaagcaaacaattaattgctacacaattttaagcggacaaaagcaatcctggcagcacattcagcgcactgata 115  Q
    ||||||||| ||||||||| ||||||| || |||||||||||||||||||| ||| || | |||| || ||| ||  | ||||||||||||  |||||||    
T  38115990 attcagcttacagatggtcatactacagagaaaacaattaattgctacacattttcaaaccgacagaatcaacccaaggagcacattcagcagactgata 38115891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 38124111 - 38124026
Alignment:
Q  135 cactgatattgagtcaaattagagtgaatcctatcagtttaatgtactgttggacaacattaaactcaacaaataagaaaagaggt 220  Q
    |||||||||||| | ||||| |||||||||||| |||| |||||    |||||||||||||||| | |  |||||| |||||||||    
T  38124111 cactgatattgaataaaatttgagtgaatcctaacagtataatgcttcgttggacaacattaaattaacaaaataataaaagaggt 38124026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 43721981 - 43722027
Alignment:
Q  238 ggcacagccatgtgagcttactataactatcaaacaggaacggaaaa 284  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  43721981 ggcacagccatatgagcttactatatctatcaaacaggaacagaaaa 43722027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43721769 - 43721810
Alignment:
Q  1 aacaagagagaatgtattcagcttgcagatggtcttactaca 42  Q
    |||||||||| ||| ||||||||||||||||||| |||||||    
T  43721769 aacaagagagtatggattcagcttgcagatggtcgtactaca 43721810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University