View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19884_high_3 (Length: 345)
Name: NF19884_high_3
Description: NF19884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19884_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 101 - 330
Target Start/End: Original strand, 47777610 - 47777843
Alignment:
| Q |
101 |
tacaaggtatcctctgtttctttttaaacaaatgcatacccaaaactctaactcaataagattattcattctttaagcacaaa----caaccatggctgt |
196 |
Q |
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| T |
47777610 |
tacaaggtatcctctgtttctttttaaacaaatgcatacccaaaactctaactcaataagattattcattctttaagcacaaaaaaacaaccatggctgt |
47777709 |
T |
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| Q |
197 |
tattttttcagggaaatattttccacttcttaatctcctactcatattcatcatttttactaatcaagccaaagccaacaacaacccacaaaacttccac |
296 |
Q |
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| T |
47777710 |
tattttttcagggaaatattttccacttcttaatctcctactcatattcatcatttttactaatcaagccaaagccaacaacaacccacaaaacttccac |
47777809 |
T |
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| Q |
297 |
tatttctgtgatcacagcaacgagagaggtaact |
330 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
47777810 |
tatttctgtgatcacagcaacgagagaggtaact |
47777843 |
T |
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