View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19884_high_8 (Length: 227)
Name: NF19884_high_8
Description: NF19884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19884_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 52154465 - 52154244
Alignment:
| Q |
6 |
atgttgaagaaaacatcttgattaagaatgggttcgtgaaagatgatgtaactttcttggtgatggatgatttagttattcaacccttgagttcagctat |
105 |
Q |
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| T |
52154465 |
atgttgaagaaaacatcttgattaagaatgggttcgtgaaagatgatgtaactttcttggtgatggatgatttagttattcaacccttgagttcagctat |
52154366 |
T |
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| Q |
106 |
atcaatggtttctttacttagaaacaagtttaatatcaacgagattggtgtcttgcaagaaatggtggttgaattggggctggatgaggtaagtattgcc |
205 |
Q |
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| T |
52154365 |
atcaatggtttctttacttagaaacaagtttaatatcaacgagattggtgtcttgcaagaaatggtggttgaattggggctggatgaggtaagtattgcc |
52154266 |
T |
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| Q |
206 |
acttgtattttcatgtgtttta |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
52154265 |
acttgtattttcatgtgtttta |
52154244 |
T |
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