View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19884_low_4 (Length: 300)
Name: NF19884_low_4
Description: NF19884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19884_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 52806867 - 52807149
Alignment:
| Q |
18 |
caaaggagaaggtgttgttggtaacctattaagagctacattgaaacaaagctcaagagctctagattgaagtggatgttgtgaagtttgatggtgaggc |
117 |
Q |
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| T |
52806867 |
caaaggagaaggtgttgttggtaacctattaagagctacattgaaacaaagctcaagagccctagattgaagtggatgttgtgaagtttgatggtgaggc |
52806966 |
T |
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| Q |
118 |
tgatgagacttaagacaagctcttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgtggatgacctcgccttc |
217 |
Q |
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| T |
52806967 |
tgatgagacttaagacaagcccttttgaaggaacttagtcttaaggtaagtaaagtgatggctacatgtagaggagtgacttgtggatgacctcgccttc |
52807066 |
T |
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| Q |
218 |
tagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatc |
300 |
Q |
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| T |
52807067 |
tagccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatc |
52807149 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 16611286 - 16611234
Alignment:
| Q |
43 |
ctattaagagctacattgaaacaaagctcaagagctctagattgaagtggatg |
95 |
Q |
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| T |
16611286 |
ctattaagagcaacattgaagcaaagttcaagagctctacattgaagaggatg |
16611234 |
T |
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