View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19884_low_7 (Length: 238)
Name: NF19884_low_7
Description: NF19884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19884_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 41982246 - 41982105
Alignment:
| Q |
18 |
gctcttattctccattctttggcggtggttacaaattgtctgtttatgcttgctaaaatgactgaattaccttttacgtggctt---tattgtttgtaga |
114 |
Q |
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| T |
41982246 |
gctcttattctccattctttggcggtggttacaaattgtctgtttatgcttgctaaaatgactgaattaccttttacgtggctttattattgtttgtaga |
41982147 |
T |
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| Q |
115 |
ggatggtggttgaatctcattttcagcaataggattatacta |
156 |
Q |
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| T |
41982146 |
ggatggtggttgaatctcattttctgcaataggattatacta |
41982105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 41982063 - 41982023
Alignment:
| Q |
198 |
attagcttgaaaaatgtggtcttaaatggcaaaaacaatat |
238 |
Q |
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| T |
41982063 |
attagcttgaaaaatgtggtcttaaatggcaaaaacaatat |
41982023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 53808408 - 53808468
Alignment:
| Q |
19 |
ctcttattctccattctttggcggtggttacaaattgtctgtttatgcttgctaaaatgac |
79 |
Q |
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| T |
53808408 |
ctcttactctccattcattgatgatggttacaaattgtctgtttatcctcgctaaattgac |
53808468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 47225878 - 47225754
Alignment:
| Q |
23 |
tattctccattctttggcggtggttacaaattgtctgtttatgcttgctaaaatgactgaattaccttttacgtggctttattgtttgtagaggatggtg |
122 |
Q |
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| T |
47225878 |
tattctccattcattgacggtggttacatat-gcctatttatccttgctaaaatgactggattaccttttacatggctttattccttttagaagatggtg |
47225780 |
T |
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| Q |
123 |
gttgaatctcattttcagcaatagga |
148 |
Q |
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| T |
47225779 |
gttgaatctcattttcagccatagga |
47225754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 19043255 - 19043218
Alignment:
| Q |
108 |
ttgtagaggatggtggttgaatctcattttcagcaata |
145 |
Q |
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| T |
19043255 |
ttgtaaagaatggtggttgaatctcattttcagcaata |
19043218 |
T |
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