View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19885_low_1 (Length: 424)
Name: NF19885_low_1
Description: NF19885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19885_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 407
Target Start/End: Complemental strand, 25058464 - 25058069
Alignment:
| Q |
12 |
atgaatatcaaggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccc |
111 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25058464 |
atgaacatcaaggccattgatttgtggtctttaattcagagaagagatgattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccc |
25058365 |
T |
|
| Q |
112 |
tatattaaaaaatatatatcaaatatgcatttcaatgatttaattaggtgatttgattattttttagtgatggaattcatttctctgctgaggggagtga |
211 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25058364 |
tatattaataaatatatatcaaatttgcatttcaatgatttaattagatgatttggttattttttagtgatggaattcatttctctgctgaggggagtga |
25058265 |
T |
|
| Q |
212 |
aatggtgtcaaaggaaataattaaggtcatcaaagaagcagactggaaaccaagtctatattggaaaacaatgccagttgagtttggagaagattcaccg |
311 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
25058264 |
aatggtgtcaaaggaaataattaaggttatcaaagaagcagagtgggaaccaaatctatattggaagacaatgccagttgaatttggagaagattcaccg |
25058165 |
T |
|
| Q |
312 |
tatgatccaattcatccattggatccaacgaaaactattaatatctccaatattccattcccacatggtgaggattgggagtgggagtagacttat |
407 |
Q |
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| T |
25058164 |
tttgatccaattcatccattggatccaacgaaaactattaatatctccaatattccattcccacatggtgaggattgggagtgggagtagacttat |
25058069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 25071382 - 25071078
Alignment:
| Q |
7 |
gtgagatgaatatcaaggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtat |
106 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||| |||||| | |||||| ||||||| ||| |||||||||||||||| || || ||| | |||| |
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| T |
25071382 |
gtgagatgaaaatcaaggccattgatacgtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagtatggtcgcattt--gtat |
25071285 |
T |
|
| Q |
107 |
gtccctatattaaaaaatatatatcaaatatgcatttcaatgatttaattaggtgatttgattattttttagtgatggaattcatttctctgctgagggg |
206 |
Q |
| |
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| || | | ||||| ||| ||||| || ||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| | || ||||||| |
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| T |
25071284 |
gcaccaaaactaaaa----tattacaaatttgtttttcaataatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgagggg |
25071189 |
T |
|
| Q |
207 |
agtgaaatggtgtcaaaggaaataattaaggtcatcaaagaagcagactggaaaccaagtctatattggaaaacaatgccagttgagtttggagaagatt |
306 |
Q |
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| T |
25071188 |
agtgaaatagtaacaaaggagatattgaatgtcatcaaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagatt |
25071089 |
T |
|
| Q |
307 |
caccgtatgat |
317 |
Q |
| |
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|||| |||||| |
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| T |
25071088 |
caccttatgat |
25071078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 25062679 - 25062375
Alignment:
| Q |
7 |
gtgagatgaatatcaaggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtat |
106 |
Q |
| |
|
|||||||||| || |||| ||||||| |||||||| |||||||| |||||| ||||||| ||| ||||||||||||||||| || |||||| ||| | |
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| T |
25062679 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttattt-- |
25062582 |
T |
|
| Q |
107 |
gtccctatattaaaaaatatatatcaaatatgcatttcaatgatttaattaggtgatttgattattttttagtgatggaattcatttctctgctgagggg |
206 |
Q |
| |
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| |||| | || || | | |||||| || | || | ||||||||||||| ||||||||||| ||||||||||| ||||| | || ||||||| |
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| T |
25062581 |
gcacctaaactataa----tgtttcaaatttgtttatccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgagggg |
25062486 |
T |
|
| Q |
207 |
agtgaaatggtgtcaaaggaaataattaaggtcatcaaagaagcagactggaaaccaagtctatattggaaaacaatgccagttgagtttggagaagatt |
306 |
Q |
| |
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|||||||| || ||||||||||| | || || |||||||||||||| ||| ||||||||||||||||||| ||||||| ||| ||||||||||||| |
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| T |
25062485 |
agtgaaatagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaactgaatttggagaagatt |
25062386 |
T |
|
| Q |
307 |
caccgtatgat |
317 |
Q |
| |
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|||| |||||| |
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|
| T |
25062385 |
caccttatgat |
25062375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 25084288 - 25083985
Alignment:
| Q |
7 |
gtgagatgaatatcaaggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtat |
106 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| |||||||| || ||| ||||||| ||| ||||||||| ||||||| | |||||| | |||| |
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| T |
25084288 |
gtgagatgaaaataaaggccattgatttgtggtctgcaattcagaaaatagatgattggagagatgtttgtttcgtgtaagtacgatctcattt--gtat |
25084191 |
T |
|
| Q |
107 |
gtccctatattaaaaaatatatatcaaatatgcatttcaatgatttaattaggtgatttgattattttttagtgatggaattcatttctctgctgagggg |
206 |
Q |
| |
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| |||| | ||||| ||| |||||| || | ||||| ||||||||||| ||||||||||||| ||||||||||| ||||| | || ||||| |
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| T |
25084190 |
gcaccta-actaaaa----tatttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacaagggg |
25084096 |
T |
|
| Q |
207 |
agtgaaatggtgtcaaaggaaataattaaggtcatcaaagaagcagactggaaaccaagtctatattggaaaacaatgccagttgagtttggagaagatt |
306 |
Q |
| |
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|||||||| || |||| || ||| | || |||||| |||||||||| ||||||||||||||||||||||| |||||||| ||| ||||||||||||| |
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| T |
25084095 |
agtgaaatagtaacaaaagagatattgaatgtcatcgaagaagcagagtggaaaccaagtctatattggaagttaatgccagctgaatttggagaagatt |
25083996 |
T |
|
| Q |
307 |
caccgtatgat |
317 |
Q |
| |
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| || |||||| |
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| T |
25083995 |
ctccttatgat |
25083985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 317
Target Start/End: Complemental strand, 25089931 - 25089763
Alignment:
| Q |
149 |
atttaattaggtgatttgattattttttagtgatggaattcatttctctgctgaggggagtgaaatggtgtcaaaggaaataattaaggtcatcaaagaa |
248 |
Q |
| |
|
||||| || |||| ||||||||||| ||||||||||| | ||||| || |||||||||||||||| || ||||||| ||| | || ||||| || || |
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|
| T |
25089931 |
atttagtttggtggtttgattatttcttagtgatggagtacatttatcaactgaggggagtgaaatagtaacaaaggagatattgaatgtcataaagaaa |
25089832 |
T |
|
| Q |
249 |
gcagactggaaaccaagtctatattggaaaacaatgccagttgagtttggagaagattcaccgtatgat |
317 |
Q |
| |
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||||| ||| |||||||||||||||| || |||||||| ||| |||||||||||| |||| |||||| |
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|
| T |
25089831 |
gcagagtgggaaccaagtctatattgtaagttaatgccagctgaatttggagaagatacaccttatgat |
25089763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 25090580 - 25090485
Alignment:
| Q |
7 |
gtgagatgaatatcaaggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcatatat |
102 |
Q |
| |
|
|||||||||| || |||| ||||||| |||||||| |||| ||| |||||| ||||||||||| ||||||||||||||||| || |||| ||||| |
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|
| T |
25090580 |
gtgagatgaaaataaaggtcattgatatgtggtctgcaatttagaaaagagatgattggaaagatgtttgtttcatgtaagtatgatctcgtatat |
25090485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 25094759 - 25094727
Alignment:
| Q |
9 |
gagatgaatatcaaggccattgatttgtggtct |
41 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |
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|
| T |
25094759 |
gagatgaatatcaaggccattgatctgtggtct |
25094727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 5037109 - 5037041
Alignment:
| Q |
252 |
gactggaaaccaagtctatattggaaaacaatgccagttgagtttggagaagattcaccgtatgatcca |
320 |
Q |
| |
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|||||||| ||||||||| | |||||| |||||||| |||||||| |||||||||||| ||||||||| |
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|
| T |
5037109 |
gactggaacccaagtctacactggaaatcaatgccaaatgagtttgcagaagattcaccatatgatcca |
5037041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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