View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19885_low_3 (Length: 388)
Name: NF19885_low_3
Description: NF19885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19885_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 32894201 - 32893827
Alignment:
| Q |
22 |
caatcatctatgactatgatcataccaaattgttcgtctgaaacaaacaaattaattaattcaatgta------ggtactaacaatcggttgctatgaaa |
115 |
Q |
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| T |
32894201 |
caatcatctatgactatgatcataccaaattgttcgtctgaaacaaacaaattaattaattcaatctaatcataggtactaacaatcggttgctatgaaa |
32894102 |
T |
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| Q |
116 |
gtttgatagttattaagttagtcaaatacatctcggttttaagtttaattaacgtttgtacaaaattagtctttttagtttt------------aattgg |
203 |
Q |
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| T |
32894101 |
gttcgatagttattaagttggtcaaatacatctctgttttaagtttaatcaacgtttgtacaaaattagtctttttagttttttttttagttttaattgg |
32894002 |
T |
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| Q |
204 |
tcnnnnnnnnctcggtaaaagtgaacaaattagtcctttaatttgttttgtaacatattgatactttttcatccaacaaatacatcttttttgcaacaaa |
303 |
Q |
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| T |
32894001 |
tctttttt--ctcggtaaaagtgaacaagttagtcctttaatttgttttgtaacatattgatactttttcatccaacaaatacatcttttttgtaacaaa |
32893904 |
T |
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| Q |
304 |
catgatcatttaacattgaggtgaaatgtccaaaaaagtgtttacataaaataggattacttacatgcattttcttc |
380 |
Q |
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| T |
32893903 |
catgatcatttaacattgagatgaaatgtccaaaaaagtgtttacacaaaataggattacttacatgcattttcttc |
32893827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 48831611 - 48831646
Alignment:
| Q |
304 |
catgatcatttaacattgaggtgaaatgtccaaaaa |
339 |
Q |
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| T |
48831611 |
catgatcatttaacattgaggtgaaaggtccaaaaa |
48831646 |
T |
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