View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19885_low_4 (Length: 386)
Name: NF19885_low_4
Description: NF19885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19885_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 8451940 - 8451572
Alignment:
| Q |
7 |
gaaaatgcagaaactcgaggtatgccacatttgtgtgtcccttgtttcacctctgctcactgaatatattgtaagatataatatttttacttcttatcag |
106 |
Q |
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| T |
8451940 |
gaaaatgcagaaactcgaggtatgccacatttgtgtgtcccttgttacacctctgctcactgaatatattataagatataatatttttacttcttatcag |
8451841 |
T |
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| Q |
107 |
gaagatcaatggttacccctgcaccttttccccaaggtatacatcgttatattgcgtctataatctcacctatagctcatgcatggtagatagtttaatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8451840 |
gaagatcaatggttacccctgcaccttttccccaaggtatacatcgttatattgcgtctataatctcacctatagctcatgcatggtagatagtttaatg |
8451741 |
T |
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| Q |
207 |
ctcttgttaataaatttatcaattttgaagatatattggaataataagttaattaacttgacttactgaggtaaaaaagggatttattatagcaacaact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8451740 |
ctcttgttaataaatttatcaattttgaagatatattggaataataagttaattaacttgacttactgaggtaaaaaagggatttattatagcaacaact |
8451641 |
T |
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| Q |
307 |
aaagaacttttctcaaataaattgcacatatgtttggtaa-----cttagtagttgtagacctcaatat |
370 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
8451640 |
aaagaacttttctcaaatcaattgcacatatgtttggtaaggtaacctagtagttgtagacctcaatat |
8451572 |
T |
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