View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_high_13 (Length: 292)
Name: NF19886_high_13
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 278
Target Start/End: Complemental strand, 43097644 - 43097375
Alignment:
| Q |
12 |
aagaaagttagtagcaatactgagcttaagactgagtaaaataccccacaactctgtatgtgtgatggtacaaatctccagcttagcagcaacacatgac |
111 |
Q |
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| T |
43097644 |
aagaaagttagtagcaatactgagcttaagactgagtaaaataccccacaactctgtatgtgtgatggtacaaatctccagcttagcagcaacacatgac |
43097545 |
T |
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| Q |
112 |
accaaacattgttctaagatgtttcctaagcacgacacaacaagatgcatgcatagtcagattttgtaatttcgccatcgtagttaagcttcatccaact |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43097544 |
accaaacattgttctgagatgtttcctaagcacgacacaacaagatgcatgcatagtcagatgttgtaatttcgccatcgtagttaagcttcatccaact |
43097445 |
T |
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| Q |
212 |
cgtatttggaggataaaaaggaattacttgacacctatcgtgtga---tccttatacatgtaagtattat |
278 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||||||| |
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| T |
43097444 |
cgtatttggaggataaaaaagaattacttcacacctatcgtgtgatcttctttatacatgtaagtattat |
43097375 |
T |
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