View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19886_high_16 (Length: 248)
Name: NF19886_high_16
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 41323332 - 41323221
Alignment:
| Q |
18 |
gctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggtttgccttcatgtttcctttcctttctacctattggtactagagtatgcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41323332 |
gctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggtttgccttcatgtttcctttcctttctacctattggtactagagtatgcatc |
41323233 |
T |
|
| Q |
118 |
aaaatgttccat |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41323232 |
aaaatgttccat |
41323221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 41323196 - 41323103
Alignment:
| Q |
155 |
cctatatgcagagtaaatagtaatagagaaaagtttctttcgcacacaatttgacatcaatgtcatatttttatactgttttcgctttctatat |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41323196 |
cctatatgcagagtaaatagtaatagagaaaagtttctttcgcacacaatttgacatcaatgtcatatttttatacggttttcgctttctatat |
41323103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 41308778 - 41308730
Alignment:
| Q |
18 |
gctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggt |
66 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
41308778 |
gctccaagctggtgtcttgctccatttgaaccagagggcttattgaggt |
41308730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University