View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_low_1 (Length: 547)
Name: NF19886_low_1
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 8e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 35037219 - 35037438
Alignment:
| Q |
16 |
atctaatattaattatgatctcattattttcaaatagtctaatatatttagtgattaaatattcgttgttgtaatagactatttaataatcttgtaaacn |
115 |
Q |
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| T |
35037219 |
atctaatattaattatgatctcattattttcaaatagtctaatatatttagcgattaaatattcgttgttgtaatagactattgaataatcgtgtaaaca |
35037318 |
T |
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| Q |
116 |
nnnnnnnn-gactatttaatgatcgtatatatacaaatctataatagaaat-----ggatgaagaattgagtaatacattggttttatattagattggtt |
209 |
Q |
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| T |
35037319 |
aaaaaaaaagactatttaatgatcgtatatatacaaatctataatagaaattaaatggatgaagaattgagtaatacattggttttatattagattggtt |
35037418 |
T |
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| Q |
210 |
ttagattgtgcatgcatgtt |
229 |
Q |
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| T |
35037419 |
ttagattgtgcatgcatgtt |
35037438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 35037469 - 35037576
Alignment:
| Q |
225 |
atgttgcttttgtttcaggctcactgtagatgattaaattgaggtaggtgtaacgatagatgctgaatcttatccacagcatccaggtgaaccagattgt |
324 |
Q |
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| T |
35037469 |
atgttgcttttgtttcaggctcattgtagatgattaaattgaggtaggtgaaacaatagattctgaatcttatccacagcatccaggtgaaccagattgt |
35037568 |
T |
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| Q |
325 |
tcatatta |
332 |
Q |
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| T |
35037569 |
tcatatta |
35037576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 331 - 412
Target Start/End: Original strand, 35037638 - 35037719
Alignment:
| Q |
331 |
tagtaacgtacaatgtatttctacatattttgttcttattagttatgttgatacttaatacataatttattcctctagttgc |
412 |
Q |
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| T |
35037638 |
tagtaacgtacaatgtatttttacatattttgttcttattagttatgttgatacttaatacataatttattcctctagttgc |
35037719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 35037716 - 35037768
Alignment:
| Q |
474 |
ttgcagggtcaaatgggatgaatgatctctactcctccagccagtccattaca |
526 |
Q |
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| T |
35037716 |
ttgcagggtcaaatgggatgaatgatctctactcctccagccagtccattaca |
35037768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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