View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_low_10 (Length: 352)
Name: NF19886_low_10
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 37338275 - 37337952
Alignment:
| Q |
19 |
aagtagacttatataagttgctcctcatcttggatccgagttgcgctgtttccaatttctcttgcagatcaagagttcgcagaggaacagataaatgtcc |
118 |
Q |
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| T |
37338275 |
aagtagacttatataagttgctcctcatcttggatccgagttgcgctatttccaatttctcttgcagatcaagagttcgcagaggaacagataaatgtcc |
37338176 |
T |
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| Q |
119 |
aattgaagacattgtgctcctcatatatagtcggggacttgccacaattctcttagcagatgctcccattatatatgctgtattcttaggtttcatatta |
218 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338175 |
aattgaagacattgtgctcctcatatatagttcgggacttgccacaattctcttagcagatgctcccattatatatgctgtattcttaggtttcatatta |
37338076 |
T |
|
| Q |
219 |
acgtggctttttataggagacaaatgtttgttgtgagtatatgaaatgggtttagcagactttgaaaacaaagtttcattttgaaatcttttcattgctg |
318 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37338075 |
acgtgactttttataggagacaaatgtttgttgtgagtaactgaaatgggtttagcagactttgaaaacaaagtttcattttgaaatcttttcattgttg |
37337976 |
T |
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| Q |
319 |
tatttcccactttatgagcctttg |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
37337975 |
tatttcccactttatgagcctttg |
37337952 |
T |
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