View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19886_low_15 (Length: 265)
Name: NF19886_low_15
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 43599247 - 43599373
Alignment:
| Q |
110 |
cacaattttctatgaaacaaatacaatttttaatgatgcctttaatatgattttggatgattaattcttgcagatatgttaagagtagaaatgataagca |
209 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43599247 |
cacaattttctatgaaacaaaaacaatttttaatgatgacttt-----------ggatgattaattcttgcagatatgttaagagtagaaatgataagca |
43599335 |
T |
|
| Q |
210 |
gttgtggcgtaagtcatctgaagggcaaacagaccact |
247 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
43599336 |
gttgtggcgtaagtcagctgaattgcaaacagaccact |
43599373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 43599185 - 43599248
Alignment:
| Q |
13 |
aatattagtttgttcaaatagtgtatcgcaaaataacagtcatttgttcgaattccactattca |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43599185 |
aatattagtttgttcaaatagtgtatcgcaaaataacagtcatttgttcgaattccactattca |
43599248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University