View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19886_low_18 (Length: 248)

Name: NF19886_low_18
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19886_low_18
NF19886_low_18
[»] chr1 (5 HSPs)
chr1 (96-230)||(45684720-45684854)
chr1 (22-95)||(20186867-20186940)
chr1 (22-95)||(30339636-30339709)
chr1 (22-89)||(9672995-9673062)
chr1 (27-95)||(51787272-51787340)
[»] chr7 (8 HSPs)
chr7 (22-95)||(48057725-48057798)
chr7 (23-95)||(11765707-11765779)
chr7 (22-95)||(496683-496756)
chr7 (25-95)||(42535243-42535313)
chr7 (22-95)||(2286458-2286531)
chr7 (22-95)||(25185959-25186032)
chr7 (22-91)||(7527290-7527359)
chr7 (22-88)||(23844642-23844708)
[»] chr3 (6 HSPs)
chr3 (22-91)||(49786397-49786466)
chr3 (25-96)||(8436925-8436996)
chr3 (22-95)||(47940826-47940899)
chr3 (22-95)||(8152977-8153052)
chr3 (35-95)||(29836808-29836868)
chr3 (31-89)||(48779008-48779066)
[»] chr2 (2 HSPs)
chr2 (22-95)||(13922185-13922258)
chr2 (22-92)||(11828960-11829030)
[»] chr5 (5 HSPs)
chr5 (22-94)||(38280299-38280371)
chr5 (22-95)||(25955986-25956059)
chr5 (31-95)||(1501404-1501468)
chr5 (31-95)||(42250116-42250180)
chr5 (22-95)||(7886355-7886428)
[»] chr8 (2 HSPs)
chr8 (31-95)||(4076979-4077043)
chr8 (31-90)||(3780394-3780453)
[»] chr4 (2 HSPs)
chr4 (22-95)||(52055174-52055247)
chr4 (22-95)||(1158281-1158354)
[»] chr6 (1 HSPs)
chr6 (22-95)||(33594545-33594618)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 45684854 - 45684720
Alignment:
Q  96 ccacttaactagctatcgagaatatatcagacactaactactatagctgggaattaactgtctaactaacttcagctttctgtcaaagaaaacaatagat 195  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45684854 ccacttaactagctatcgagaatatatcagacactaactaatatagctgggaattaactgtctaactaacttcagctttctgtcaaagaaaacaatagat 45684755  T
Q  196 tcaactctgagctgtactgtaacaccttatttcct 230  Q
    |||||||||||||||||||||||||||||||||||    
T  45684754 tcaactctgagctgtactgtaacaccttatttcct 45684720  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 20186867 - 20186940
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20186867 taggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 20186940  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 30339709 - 30339636
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  30339709 taggacacgtgtcacatgtttatgtagaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 30339636  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 9672995 - 9673062
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatca 89  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  9672995 taggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctataggtgtacatgtatca 9673062  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 51787340 - 51787272
Alignment:
Q  27 cacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  51787340 cacgtgtcacatgtttatgtgaaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 51787272  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 48057725 - 48057798
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  48057725 taggacacgtgtcacatgtttatgtggaagtttaaatatgtatgccacctatgggtgtacatgtatcaccactc 48057798  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 11765779 - 11765707
Alignment:
Q  23 aggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  11765779 aggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 11765707  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 496756 - 496683
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  496756 taggacacgtgtcatatgtttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 496683  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 42535243 - 42535313
Alignment:
Q  25 gacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| ||||| |||||    
T  42535243 gacacgtgtcacatgtttatgtggaggtttaagtgtgtatgtcacctatgagtgtacatatatcatcactc 42535313  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 2286531 - 2286458
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||||||||| |||||| |||||||||||||||||||| || ||||| |||||||||| ||||    
T  2286531 taggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactc 2286458  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 25185959 - 25186032
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||||||||| |||||| ||||||||||||||| |||||||| |||| |||| ||||||||||    
T  25185959 taggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctatgagtgtgcatgcatcaccactc 25186032  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 7527290 - 7527359
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcacc 91  Q
    |||| ||| |||||||||||| |||||| |||||||||||||||||||| |||  | | |||||||||||    
T  7527290 taggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaatgaatatgcatgtatcacc 7527359  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 23844708 - 23844642
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatc 88  Q
    |||| ||| |||||||||||||||||||  ||| ||||||||||  |||||||| ||| ||||||||    
T  23844708 tagggcacatgtcacatgtttatgtggagatttgagtgtgtatgttacctatggatgtgcatgtatc 23844642  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 49786466 - 49786397
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcacc 91  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49786466 taggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcacc 49786397  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 8436925 - 8436996
Alignment:
Q  25 gacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactcc 96  Q
    ||||||||||| || ||||||| || |||||| |||||||||||||||||||||||||| ||||||||||||    
T  8436925 gacacgtgtcatatatttatgtagaggtttaaatgtgtatgccacctatgggtgtacatatatcaccactcc 8436996  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 47940899 - 47940826
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||||||||| |||||| |||||||||||||||||||| || ||||| |||||||||| ||||    
T  47940899 taggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactc 47940826  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 8153052 - 8152977
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgt--acatgtatcaccactc 95  Q
    |||| ||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||  | ||||||||||||||    
T  8153052 taggccacatgtcacatgtttatgtggaggtttaggtgtgtatgccacctataggtgtgcatatgtatcaccactc 8152977  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 29836808 - 29836868
Alignment:
Q  35 acatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||    
T  29836808 acatatttgtgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtatcaccactc 29836868  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 48779008 - 48779066
Alignment:
Q  31 tgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatca 89  Q
    |||||||| |||||||||| |||||| || ||||||||||||| ||||| |||||||||    
T  48779008 tgtcacatatttatgtggatgtttaaatgagtatgccacctataggtgtgcatgtatca 48779066  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 13922258 - 13922185
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  13922258 taggacacgtgtcacatgtttacgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 13922185  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 11829030 - 11828960
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcacca 92  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||| ||||| ||||||    
T  11829030 taggacacatgtcacatatttatgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtctcacca 11828960  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 38280299 - 38280371
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccact 94  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  38280299 taggacacgtgtcacatgtttatgtggaggtttaagtgtgtataccacctatggatgtacatgtatcaccact 38280371  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 25955986 - 25956059
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||||||||| |||||| |||||| ||||||||||||||||| |||| |||||||||||||||    
T  25955986 taggccacatgtcacatgtttgtgtggaggtttaaatgtgtatgccacctatgagtgtgcatgtatcaccactc 25956059  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 1501404 - 1501468
Alignment:
Q  31 tgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||| | | |||||||||||||||    
T  1501404 tgtcatatgtttatgtggaggtttaagtgtgtatgtcacctatggatctgcatgtatcaccactc 1501468  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 42250180 - 42250116
Alignment:
Q  31 tgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||||||||||| |||||| |||||||||| |||| ||  ||||||||| |||||||||||||||    
T  42250180 tgtcacatgtttgtgtggaggtttaagtgtctatgtcatttatgggtgtgcatgtatcaccactc 42250116  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 7886428 - 7886355
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||||||||| |||||| ||||||||||||||| |||||||  || | |||| ||||||||||    
T  7886428 taggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctataagtatgcatgaatcaccactc 7886355  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 4076979 - 4077043
Alignment:
Q  31 tgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||| |||||    
T  4076979 tgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatgggtatgcatgtatcatcactc 4077043  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 3780394 - 3780453
Alignment:
Q  31 tgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcac 90  Q
    |||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||    
T  3780394 tgtcacatgtttgtgtggaggtttgagtgtgtatgccacctatggatgtacatgtatcac 3780453  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 52055174 - 52055247
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||||||||| ||| || ||||||||||||||||||||||||  ||| |||||||||||||||    
T  52055174 taggccacatgtcacatgtttgtgtagaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 52055247  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 1158281 - 1158354
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||||||||| |||||| ||||||||||||| |||  |||| | ||| ||||||||| |||||    
T  1158281 taggccacatgtcacatgtttgtgtggaggtttaagtgtgtacgccttctatcgatgtgcatgtatcatcactc 1158354  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 33594545 - 33594618
Alignment:
Q  22 taggacacgtgtcacatgtttatgtggaagtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 95  Q
    |||| ||| |||||||||||| |||| | |||||||||||||||||||| |||| ||| |||||||||| ||||    
T  33594545 taggccacatgtcacatgtttgtgtgaaggtttaagtgtgtatgccaccaatggatgtgcatgtatcactactc 33594618  T

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