View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_low_2 (Length: 496)
Name: NF19886_low_2
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_2 |
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| [»] scaffold0444 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 187 - 486
Target Start/End: Original strand, 30182953 - 30183252
Alignment:
| Q |
187 |
aaattccagttccttgaaatgcaaaagctagttaataaaataaagcatgacgcaacttactcatcatttccaagttttcaatctgtttcttgagttggtc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
30182953 |
aaattccagttccttgaaatgcaaaagctagttaataaaataaagcatgatgagacttgctcatcatttccaagttttcaatctgtttcttgagttgatc |
30183052 |
T |
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| Q |
287 |
aggatctttcttcaaaatccccacatccctaaccttctttctttcttttttattctgtaaaccaaaacaacaaagcaaaaatggaataaaacctaattgc |
386 |
Q |
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| T |
30183053 |
aggatctttcttcaaaatccccacatccctcaccttctttctttctttttaattctgtaaaccaaaacaacaaagcaaaaatggaataaaacctaattgc |
30183152 |
T |
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| Q |
387 |
atgattgaaattcaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagatatggttcatgaccttaccgcctttg |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30183153 |
atgattgaaattcaattttgcaaaataaacactcaaaatttcaatttactgtaatgaaagtgaaaatagatagatagggttcatgaccttaccgcctttg |
30183252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 182 - 377
Target Start/End: Original strand, 44430879 - 44431074
Alignment:
| Q |
182 |
gggtgaaattccagttccttgaaatgcaaaagctagttaataaaataaagcatgacgcaacttactcatcatttccaagttttcaatctgtttcttgagt |
281 |
Q |
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| T |
44430879 |
gggtgaaattccagttccttgaaatgcaaaagctagttaataaaataaagcatgacgcgacttactcatcatttccaagttttcaatctgtttcttgagt |
44430978 |
T |
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| Q |
282 |
tggtcaggatctttcttcaaaatccccacatccctaaccttctttctttcttttttattctgtaaaccaaaacaacaaagcaaaaatggaataaaa |
377 |
Q |
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| T |
44430979 |
tgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaaccaaaacaacaaagcaaaaatggaataaaa |
44431074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 30183877 - 30183744
Alignment:
| Q |
18 |
ataagtgaactcaatgacttgttttctgacccacattttccattaattaaaaagtaatcccagtccgtaactgtcttttgtttgaaattattaattcatt |
117 |
Q |
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| T |
30183877 |
ataagtgaactcaatgacttgttttctgacccacattttccattaattaaaaagtaatcccagtccgtaactgtcttttgtttgaaattattaattcatt |
30183778 |
T |
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| Q |
118 |
acattacattaccaatatatttgctcccttatta |
151 |
Q |
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| T |
30183777 |
acattacattaccaatatatttgctcccatatta |
30183744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 182 - 352
Target Start/End: Original strand, 44441300 - 44441471
Alignment:
| Q |
182 |
gggtgaaattccagttcctt-gaaatgcaaaagctagttaataaaataaagcatgacgcaacttactcatcatttccaagttttcaatctgtttcttgag |
280 |
Q |
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|||||||||||||||||||| | ||||||| |||||||||||||||| ||||| | | |||||||||||||||||||||| |||||||| |||||||| |
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| T |
44441300 |
gggtgaaattccagttcctttggaatgcaagagctagttaataaaatgaagcaccgctcgacttactcatcatttccaagttctcaatctgcttcttgag |
44441399 |
T |
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| Q |
281 |
ttggtcaggatctttcttcaaaatccccacatccctaaccttctttctttcttttttattctgtaaaccaaa |
352 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44441400 |
ttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaaccaaa |
44441471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 374 - 462
Target Start/End: Original strand, 44431114 - 44431201
Alignment:
| Q |
374 |
aaaacctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagata |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
44431114 |
aaaacctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagata |
44431201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 44441566 - 44441649
Alignment:
| Q |
378 |
cctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagata |
462 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
44441566 |
cctatttgcataattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagata |
44441649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 182 - 352
Target Start/End: Original strand, 6113 - 6284
Alignment:
| Q |
182 |
gggtgaaattccagttcctt-gaaatgcaaaagctagttaataaaataaagcatgacgcaacttactcatcatttccaagttttcaatctgtttcttgag |
280 |
Q |
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|||||||||||||||||||| | ||||||| |||||||||||||||| ||||| | | |||||||||||||||||||||| |||||||| |||||||| |
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| T |
6113 |
gggtgaaattccagttcctttggaatgcaagagctagttaataaaatgaagcaccgctcgacttactcatcatttccaagttctcaatctgcttcttgag |
6212 |
T |
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| Q |
281 |
ttggtcaggatctttcttcaaaatccccacatccctaaccttctttctttcttttttattctgtaaaccaaa |
352 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6213 |
ttgatcaggatctttcttcaaaatccccacatccctcaccttctttctttcttttttattctgtaaaccaaa |
6284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 6379 - 6462
Alignment:
| Q |
378 |
cctaattgcatgattgaaattcaattttgcaaaataaacactcaaaatttcaattaactgtaatgaaagtgaaaatagatagata |
462 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
6379 |
cctatttgcataattgaaattcaattttgcaaaataaacactcaaaatttcaatt-attgcaatgaaagtgaaaatagatagata |
6462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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