View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_low_20 (Length: 240)
Name: NF19886_low_20
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 18290427 - 18290650
Alignment:
| Q |
1 |
atgcttttaacattcaagaaacttacttcctgttgaaatttcaatccgaacatcatttttacttgcaattttactttctaattatttcaattcatcactt |
100 |
Q |
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| T |
18290427 |
atgcttttaacattcaagaa-cttacttcctgttgaaatttcaatccaaacatcatttttacttgcaattttactttctaattatttcaattcatcactt |
18290525 |
T |
|
| Q |
101 |
ctcttcgactcttttaaacttcaagtcattttactttcaaatctttttcaattcaatcattgaccaactccttattaattttgattcannnnnnnnaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||| |||| |
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| T |
18290526 |
ctcttcgactcttttaaacttcaagtcattttactttcaaatctttttcaattcaatcattgactgattcattgttaattttgattca-tttttttaata |
18290624 |
T |
|
| Q |
201 |
tgaacaacaattaaaactcattcact |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
18290625 |
tgaacaacaattaaaactcattcact |
18290650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Complemental strand, 18291036 - 18291006
Alignment:
| Q |
158 |
cattgaccaactccttattaattttgattca |
188 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
18291036 |
cattgaccaactccttattaattttgattca |
18291006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 6932655 - 6932623
Alignment:
| Q |
156 |
atcattgaccaactccttattaattttgattca |
188 |
Q |
| |
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| T |
6932655 |
atcattgaccaactccttattaattttgattca |
6932623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 26291328 - 26291296
Alignment:
| Q |
156 |
atcattgaccaactccttattaattttgattca |
188 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
26291328 |
atcattgaccaactccttattaattttgattca |
26291296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 508717 - 508685
Alignment:
| Q |
156 |
atcattgaccaactccttattaattttgattca |
188 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
508717 |
atcattgaccaactccttattaattttgattca |
508685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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