View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19886_low_21 (Length: 234)

Name: NF19886_low_21
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19886_low_21
NF19886_low_21
[»] chr4 (15 HSPs)
chr4 (1-226)||(7907769-7907994)
chr4 (23-165)||(7877231-7877367)
chr4 (1-166)||(7774238-7774397)
chr4 (1-91)||(7904611-7904701)
chr4 (1-82)||(45372466-45372547)
chr4 (1-53)||(7800254-7800306)
chr4 (1-53)||(7813097-7813149)
chr4 (1-53)||(7822586-7822638)
chr4 (9-89)||(45366638-45366718)
chr4 (2-45)||(48898347-48898390)
chr4 (1-100)||(48902520-48902619)
chr4 (1-107)||(45385196-45385302)
chr4 (1-54)||(48156836-48156889)
chr4 (1-53)||(49044638-49044690)
chr4 (1-53)||(49049008-49049060)
[»] chr3 (2 HSPs)
chr3 (2-53)||(11006372-11006423)
chr3 (1-79)||(47452316-47452394)
[»] chr8 (2 HSPs)
chr8 (1-63)||(12199914-12199976)
chr8 (1-63)||(12444342-12444404)
[»] chr1 (1 HSPs)
chr1 (1-53)||(24340031-24340083)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7907994 - 7907769
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtgtc 100  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  7907994 aaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgaggaagatacggcagtgtc 7907895  T
Q  101 gtcgtcttcttcttcctctcctccgagctctctaccatcttgtaaaccttaattttacaggaagggtttccaatttaccactcgatcagtcttatataag 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7907894 gtcgtcttcttcttcttctcctccgagctctctaccatcttgtaaaccctaattttacaggaagggtttccaatttaccactcgatcagtcttatataag 7907795  T
Q  201 cagagttttaaaaaccgatgatgatg 226  Q
    ||||||||||||||||||||||||||    
T  7907794 cagagttttaaaaaccgatgatgatg 7907769  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 7877367 - 7877231
Alignment:
Q  23 ttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtgtcgtcgtcttcttcttcctctcct 122  Q
    |||||||||  ||||||||||||| ||||||| |  ||||| |||| ||||||||||||| ||||||||||| ||      |||||||||||| ||||||    
T  7877367 ttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatacggccgt------gtcttcttcttcttctcct 7877274  T
Q  123 ccgagctctctaccatcttgtaaaccttaattttacaggaagg 165  Q
    ||  || ||||||||||||||||| | ||||||||||||||||    
T  7877273 ccatgcactctaccatcttgtaaatcctaattttacaggaagg 7877231  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7774238 - 7774397
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtgtc 100  Q
    |||||||  |||||||||| | |||||| |   ||||||||||||||||| || ||  | ||| || | ||||||||||||| |||||||||||||||||    
T  7774238 aaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgaggaagatacggcagtgtc 7774337  T
Q  101 gtcgtcttcttcttcctctcctccgagctctctaccatcttgtaaaccttaattttacaggaaggg 166  Q
          |||| |||| |||||| || |||||||||||||||||||||| ||||||||||| |||||    
T  7774338 ------ttctgcttcttctcctgcgtgctctctaccatcttgtaaaccctaattttacagaaaggg 7774397  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7904701 - 7904611
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatac 91  Q
    ||||||| ||||||||||| | |||||||||  |||||||||||| ||||||||||  | ||| || | |||||||||| || ||||||||    
T  7904701 aaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaataatcaattcacgaggaagatac 7904611  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 45372466 - 45372547
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatga 82  Q
    |||||| |||||||||||| | |||||||||  ||||||||||||||||||||  ||||| || || |  ||||||||||||    
T  45372466 aaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaatttgaatcatcaattcatga 45372547  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7800306 - 7800254
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 53  Q
    ||||||||| ||||||||| |||||||||||  |||| |||||||||||||||    
T  7800306 aaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacc 7800254  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7813149 - 7813097
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 53  Q
    ||||||||| ||||||||| |||||||||||  |||| |||||||||||||||    
T  7813149 aaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacc 7813097  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7822638 - 7822586
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 53  Q
    ||||||||| ||||||||| |||||||||||  |||| |||||||||||||||    
T  7822638 aaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacc 7822586  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 45366638 - 45366718
Alignment:
Q  9 acttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagat 89  Q
    ||||||||||  |||||||||||  |||||||||||| || ||||  |||||||| ||||  |||||||||||| ||||||    
T  45366638 acttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 48898390 - 48898347
Alignment:
Q  2 aaccatgacttacaaacagacttgaaacgtgcaagagacttcac 45  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||    
T  48898390 aaccaagacttacaaacacacttgaaacgtgtaagagacttcac 48898347  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 48902619 - 48902520
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtgtc 100  Q
    |||||| |||||||||||| | ||||||||    |||||||| |||||||||||| | |  || ||||  |||||||||||| | |||||||||||||||    
T  48902619 aaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgaggtagatacggcagtgtc 48902520  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 45385196 - 45385302
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattcatgatgaagatacggcagtgtc 100  Q
    |||||| ||||||||||| || |||||||||   |||||||| || || ||||  |||||||| ||||  |||||||||| | | | || ||||||||||    
T  45385196 aaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtaggatttggatcatcaattcattaggcatatgcggcagtgtc 45385295  T
Q  101 gtcgtct 107  Q
    |||||||    
T  45385296 gtcgtct 45385302  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 48156836 - 48156889
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacca 54  Q
    |||||| |||||||||||  |||||||||||  ||||||||||||||| |||||    
T  48156836 aaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacca 48156889  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49044638 - 49044690
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 53  Q
    ||||||| ||||||||||| |||||||||||  ||||||| |||| |||||||    
T  49044638 aaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacc 49044690  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49049008 - 49049060
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 53  Q
    ||||||| ||||||||||| |||||||||||  ||||||| ||||| ||||||    
T  49049008 aaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacc 49049060  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 11006372 - 11006423
Alignment:
Q  2 aaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 53  Q
    |||||||||||||||||| |||||||||||  ||| ||||||||||||||||    
T  11006372 aaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacc 11006423  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 47452316 - 47452394
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggatctggaaaatcaattca 79  Q
    ||||||||||||| |||   ||||||| ||| ||||||||||||||||||||| ||  | ||||||||  |||||||||    
T  47452316 aaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattca 47452394  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12199976 - 12199914
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 63  Q
    ||||||||||||||||||| | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12199976 aaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12199914  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12444404 - 12444342
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaaccacagtaggat 63  Q
    ||||||||||||||||||| | ||||||| |  |||||||||||||||||||| ||| |||||    
T  12444404 aaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12444342  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24340083 - 24340031
Alignment:
Q  1 aaaccatgacttacaaacagacttgaaacgtgcaagagacttcaccggcaacc 53  Q
    ||||||||||||||||||||| ||||||||   ||||||||| ||||| ||||    
T  24340083 aaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaacc 24340031  T

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