View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_low_23 (Length: 215)
Name: NF19886_low_23
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 3799997 - 3799845
Alignment:
| Q |
21 |
ttcttctaatttatcctttaattaaactttttccatatttttaccattgtgtaccaatcaaataatttaatttttatataattgaaactttttattgttt |
120 |
Q |
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| T |
3799997 |
ttcttctaatttatcctttaattaaactttttccacatttttaccattgtgtaccaatcaaataatttaatttttacataattgaaac-ttttattgttt |
3799899 |
T |
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| Q |
121 |
tgaccgataaaagcaaatagcatcttgacgcttgtcaataataataatcataat |
174 |
Q |
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| T |
3799898 |
tgaccgataaaagccaatagcatcttgacgcttgtcaataataataataataat |
3799845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 3794480 - 3794343
Alignment:
| Q |
29 |
atttatcctttaattaaactttttccatatttttaccattgtgtaccaatcaaataatttaat--ttttatataattgaaactttttattgttttgaccg |
126 |
Q |
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| T |
3794480 |
atttatcctttaattaaaccttttccacaattttaccattgtgtaccaagcaaataatttaatttttttatataattgaaac-ttctattgttttgaccg |
3794382 |
T |
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| Q |
127 |
ataaaagcaaatagcatcttgacgcttgtcaataataat |
165 |
Q |
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| T |
3794381 |
atgaaagctgataacatcttgacgctagtcaataataat |
3794343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 3810671 - 3810570
Alignment:
| Q |
28 |
aatttatcctttaattaaactttttccatatttttaccattgtgtaccaatcaaataatttaatttttatataattgaaactttttattgttttgaccga |
127 |
Q |
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| T |
3810671 |
aatttatcgtttaattaaactttttccacaattttaccattgtgtgccaatcaagtaatttaatttttgtataattgaaac-ttctattgttttgactga |
3810573 |
T |
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| Q |
128 |
taa |
130 |
Q |
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||| |
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| T |
3810572 |
taa |
3810570 |
T |
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