View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19886_low_3 (Length: 452)

Name: NF19886_low_3
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19886_low_3
NF19886_low_3
[»] chr6 (21 HSPs)
chr6 (16-436)||(33057597-33058017)
chr6 (203-432)||(33262658-33262887)
chr6 (204-433)||(33644288-33644517)
chr6 (203-426)||(9166790-9167013)
chr6 (211-437)||(33285645-33285871)
chr6 (203-437)||(33304511-33304745)
chr6 (253-433)||(33358898-33359078)
chr6 (205-433)||(33410036-33410264)
chr6 (242-424)||(33271865-33272047)
chr6 (203-433)||(33399085-33399315)
chr6 (231-433)||(31562596-31562798)
chr6 (203-433)||(33388191-33388421)
chr6 (300-432)||(28870013-28870145)
chr6 (16-153)||(9167096-9167227)
chr6 (16-77)||(28869817-28869878)
chr6 (16-77)||(33399348-33399409)
chr6 (16-77)||(33410356-33410417)
chr6 (16-67)||(33388473-33388524)
chr6 (16-77)||(33644220-33644281)
chr6 (16-68)||(31562441-31562493)
chr6 (16-96)||(33304858-33304938)
[»] scaffold1408 (3 HSPs)
scaffold1408 (204-428)||(683-907)
scaffold1408 (91-153)||(991-1053)
scaffold1408 (16-66)||(1057-1107)
[»] scaffold0428 (3 HSPs)
scaffold0428 (204-428)||(6429-6653)
scaffold0428 (91-153)||(6737-6799)
scaffold0428 (16-66)||(6803-6853)
[»] chr2 (1 HSPs)
chr2 (214-432)||(17440638-17440856)
[»] chr4 (9 HSPs)
chr4 (281-428)||(31498873-31499020)
chr4 (261-431)||(31157250-31157420)
chr4 (281-431)||(31148336-31148486)
chr4 (310-431)||(31504032-31504153)
chr4 (281-431)||(31478818-31478968)
chr4 (329-380)||(31472411-31472462)
chr4 (297-395)||(31491627-31491725)
chr4 (297-347)||(31526524-31526574)
chr4 (306-378)||(31017634-31017706)
[»] chr7 (1 HSPs)
chr7 (305-423)||(6785236-6785354)


Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 33058017 - 33057597
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaagtatttaacaacccaaggcgtttgatgaagtctggtatatcctcagaaa 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33058017 atattcggtcttagctctcttcaatacctaaatatgtgtggctgttccaaagtatttaacaacccaaggcgtttgatgaagtctggtatatcctcagaaa 33057918  T
Q  116 agaagcagcagcatgatatacgtgaaagtgcatcacatcacctccctggcctaaaatggatcattttggctcacgattcatcacatatgttgccttcctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057917 agaagcagcagcatgatatacgtgaaagtgcatcacatcacctccctggcctaaaatggatcattttggctcacgattcatcacatatgttgccttcctt 33057818  T
Q  216 gcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaat 315  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33057817 gcatagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatgcaattgaatgtttacattggctagaaagattaaat 33057718  T
Q  316 ttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057717 ttagcgggaaacgattttgtgacattacctagcctgaggaagctatccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctc 33057618  T
Q  416 aacttccttttcctaccaata 436  Q
    |||||||||||||||||||||    
T  33057617 aacttccttttcctaccaata 33057597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 203 - 432
Target Start/End: Complemental strand, 33262887 - 33262658
Alignment:
Q  203 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 302  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||| |||| |||||||  ||||||||||| |||||||||||    
T  33262887 tgttgccttccttgcgtagtttacattgtttgcgtaatgttgacataagcttttgctatctacgccaagtgcctggcacaattgaatgcttacattggct 33262788  T
Q  303 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttg 402  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  33262787 agaaagattaaatttagggggaaatgattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttg 33262688  T
Q  403 gaatctttgcctcaacttccttttcctacc 432  Q
    |||||||||||||||||||||| |||||||    
T  33262687 gaatctttgcctcaacttccttctcctacc 33262658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 204 - 433
Target Start/End: Original strand, 33644288 - 33644517
Alignment:
Q  204 gttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggcta 303  Q
    |||||| ||||||| ||| |||| |||||||||||   ||||||| |||| ||||  |||||||||||| |||||| |||||||||||||||||| ||||    
T  33644288 gttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacattcgcta 33644387  T
Q  304 gaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttgg 403  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||    
T  33644388 gaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagttgttgg 33644487  T
Q  404 aatctttgcctcaacttccttttcctacca 433  Q
    |||||||||||||||||||||  |||||||    
T  33644488 aatctttgcctcaacttccttcccctacca 33644517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 203 - 426
Target Start/End: Complemental strand, 9167013 - 9166790
Alignment:
Q  203 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 302  Q
    |||||| ||||||||||||||||| |||||||||| | |||||||| |||| |||| ||||||||||  ||||||||||||||||||||||||  |||||    
T  9167013 tgttgcattccttgcgtagtttatattgtttgcgtgaagttgacattagctattgccatctaagccaattgcctgatacaattgaatgtttacggtggct 9166914  T
Q  303 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttg 402  Q
    |||||||||||| |||| ||||| |||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  9166913 agaaagattaaacttagggggaatcgattttgcgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaggttgttg 9166814  T
Q  403 gaatctttgcctcaacttcctttt 426  Q
    || | |||||||||||||||||||    
T  9166813 gagtttttgcctcaacttcctttt 9166790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 211 - 437
Target Start/End: Complemental strand, 33285871 - 33285645
Alignment:
Q  211 tccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagat 310  Q
    ||||||| ||| |||| |||||||||| | ||| |||| |||||||||  ||||||||| ||| |  || |||||||||||||| |||||||||||| ||    
T  33285871 tccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttatattggctagaaatat 33285772  T
Q  311 taaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttggaatcttt 410  Q
    |||| |||| ||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33285771 taaacttagggggaaacaattttgtgacactacctagcctgagaaagctgtccaaacttgtatatttaaatttggagcattgcaagttgttggaatcttt 33285672  T
Q  411 gcctcaacttccttttcctaccaatat 437  Q
    |||||||||||||||||||||||||||    
T  33285671 gcctcaacttccttttcctaccaatat 33285645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 203 - 437
Target Start/End: Complemental strand, 33304745 - 33304511
Alignment:
Q  203 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 302  Q
    ||||||| ||||||| ||| |||  |||||||||  | |||||||| ||||||||| |||||||||| || |||||| |||||||||||||| | | |||    
T  33304745 tgttgccatccttgcatagcttagtttgtttgcgagacgttgacattagcttttgccatctaagccaagttcctgatgcaattgaatgtttatactcgct 33304646  T
Q  303 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttg 402  Q
    |||||||||||| |||| ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||    
T  33304645 agaaagattaaacttagagggaaacaattttgtgactctacctagcctgaggaagctttccaaacttgtatatttaaatttgcagcattgcatgttgttg 33304546  T
Q  403 gaatctttgcctcaacttccttttcctaccaatat 437  Q
    |||||||||||||||||||||| ||||||||||||    
T  33304545 gaatctttgcctcaacttccttctcctaccaatat 33304511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 253 - 433
Target Start/End: Complemental strand, 33359078 - 33358898
Alignment:
Q  253 ttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctga 352  Q
    |||||| ||||||| || || || ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  33359078 ttttgccatctaagtcaagttcccgatgcaattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctga 33358979  T
Q  353 ggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttccttttcctacca 433  Q
    |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  33358978 ggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcaacttccttttcctacca 33358898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 205 - 433
Target Start/End: Complemental strand, 33410264 - 33410036
Alignment:
Q  205 ttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctag 304  Q
    ||||| || |||| ||| |||| |||||||||| | ||||| || ||||||||| |||||| ||| || |||||| |||||||| ||||||||| |||||    
T  33410264 ttgccatcattgcatagcttatattgtttgcgtcaagttgatattagcttttgccatctaaaccaagttcctgatgcaattgaaggtttacattcgctag 33410165  T
Q  305 aaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttgga 404  Q
    |||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||    
T  33410164 aaagattatatttagcgggaaactattttgtgacactacctagcttgaggaagctttccaaacttgaatatttagatttgcagcattgcaagttgttgga 33410065  T
Q  405 atctttgcctcaacttccttttcctacca 433  Q
    |||||||||||||||||||||||||||||    
T  33410064 atctttgcctcaacttccttttcctacca 33410036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 242 - 424
Target Start/End: Complemental strand, 33272047 - 33271865
Alignment:
Q  242 ttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacatt 341  Q
    ||||||| ||||||||| ||||| |||| || |||||| |||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |    
T  33272047 ttgacattagcttttgccatctacgccaagttcctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacact 33271948  T
Q  342 acctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttcctt 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  33271947 acctagcctgaggaagctttccaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcgacttcctt 33271865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 203 - 433
Target Start/End: Complemental strand, 33399315 - 33399085
Alignment:
Q  203 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 302  Q
    ||||||| ||||||| ||| |||  ||||||||||   |||||||| ||||||||| |||||||||| || |||||| ||||||||  ||||||||||||    
T  33399315 tgttgccatccttgcatagcttagattgtttgcgtggagttgacattagcttttgcaatctaagccaagttcctgatgcaattgaagatttacattggct 33399216  T
Q  303 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttg 402  Q
    ||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||    
T  33399215 agaaagattaaatttaaagggaaacaattttgtgacactacctagcctgaggaagctttccgaacttgtatatttaaatttggaacactgcaagttgttg 33399116  T
Q  403 gaatctttgcctcaacttccttttcctacca 433  Q
    ||||||||||||||||||||||  |||||||    
T  33399115 gaatctttgcctcaacttccttcccctacca 33399085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 231 - 433
Target Start/End: Original strand, 31562596 - 31562798
Alignment:
Q  231 tttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaatttagcgggaaacgat 330  Q
    ||||||||  |||||||| |||||||||  ||||||||| ||||||||| ||||||||||||||   | |||||||||||||||||||| ||||||| ||    
T  31562596 tttgcgtacagttgacattagcttttgccgtctaagccaagtgcctgatgcaattgaatgtttaagctcgctagaaagattaaatttagggggaaactat 31562695  T
Q  331 tttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttccttttccta 430  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  31562696 tttgtgacactacctagcttgtggaagctttccaaacttgtatatttaaatttggagcattgcgagttgttggaatctttgcctcaacttccttctccta 31562795  T
Q  431 cca 433  Q
    |||    
T  31562796 cca 31562798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 203 - 433
Target Start/End: Complemental strand, 33388421 - 33388191
Alignment:
Q  203 tgttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggct 302  Q
    ||||||| ||| ||| ||| |||  |||||||||||| |||||||| ||||||||  ||||||  || || || ||| |||||||||||||||| |  ||    
T  33388421 tgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcact 33388322  T
Q  303 agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttg 402  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  33388321 agaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttg 33388222  T
Q  403 gaatctttgcctcaacttccttttcctacca 433  Q
     ||||||| ||||||||||||| || |||||    
T  33388221 aaatcttttcctcaacttccttctcttacca 33388191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 300 - 432
Target Start/End: Original strand, 28870013 - 28870145
Alignment:
Q  300 gctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattg 399  Q
    ||||||||||||||| |||  ||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  28870013 gctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgaggaagctttccaaacttgaatatttaaatttggagcattgcaagttg 28870112  T
Q  400 ttggaatctttgcctcaacttccttttcctacc 432  Q
    || |||||||||||||||||||||| |||||||    
T  28870113 tttgaatctttgcctcaacttccttctcctacc 28870145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 9167227 - 9167096
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaagtatttaacaacccaaggcgtttgatgaagtctggtatatcctcagaaa 115  Q
    ||||||||||||||||||||| || | |||||||| ||||||||||||||| | ||| || |  |||||| ||||| |||| ||| |||||||||| |||    
T  9167227 atattcggtcttagctctcttaaagatctaaatatgtgtggctgttccaaattgtttgacgattcaaggcatttgaagaagcctgatatatcctcaaaaa 9167128  T
Q  116 agaagcagcagcatgatatacgtgaaagtgcatcacat 153  Q
    |||      ||||||||||| |||||||||||||||||    
T  9167127 aga------agcatgatataagtgaaagtgcatcacat 9167096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 28869817 - 28869878
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaagtatttaacaa 77  Q
    ||||||||||||| ||||||| || | |||||||| | ||||||||||||||| ||||||||    
T  28869817 atattcggtcttaactctcttgaagatctaaatatgtctggctgttccaaagtgtttaacaa 28869878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 33399409 - 33399348
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaagtatttaacaa 77  Q
    ||||||| ||||||||||||| |||| ||||||||   ||||||||||||||| ||||||||    
T  33399409 atattcgatcttagctctcttgaatatctaaatatgaatggctgttccaaagtgtttaacaa 33399348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 33410417 - 33410356
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaagtatttaacaa 77  Q
    |||||| |||||||||||||| || | ||| |||| ||||||||||||||||| ||||||||    
T  33410417 atattctgtcttagctctcttgaagatctatatatgtgtggctgttccaaagtgtttaacaa 33410356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 33388524 - 33388473
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaag 67  Q
    |||| |||||||||||||||| || | |||||||||||||| ||||||||||    
T  33388524 atatccggtcttagctctcttgaagatctaaatatatgtggttgttccaaag 33388473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 33644220 - 33644281
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaagtatttaacaa 77  Q
    |||||| ||||||||||||||||| | |||||| |  |||| ||||||||||| ||||||||    
T  33644220 atattcagtcttagctctcttcaagatctaaatttgggtggttgttccaaagtgtttaacaa 33644281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 31562441 - 31562493
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaagt 68  Q
    |||||| |||||||||||||| || | ||||||||  ||||||||||||||||    
T  31562441 atattcagtcttagctctcttgaagatctaaatatgcgtggctgttccaaagt 31562493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 33304938 - 33304858
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaagtatttaacaacccaaggcgtttgatgaag 96  Q
    |||||| |||||||||||||| || | |||||||| | ||| ||||||||||| ||||| || |||| || ||||| ||||    
T  33304938 atattcagtcttagctctcttgaagatctaaatatgtatggatgttccaaagtgtttaaaaatccaatgcatttgaagaag 33304858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 204 - 428
Target Start/End: Complemental strand, 907 - 683
Alignment:
Q  204 gttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggcta 303  Q
    |||||||| ||| |||| ||||| ||||||||||||  ||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||    
T  907 gttgccttgctttcgtattttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggcta 808  T
Q  304 gaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttgg 403  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  807 gaaagattaaatttagggggaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttgg 708  T
Q  404 aatctttgcctcaacttccttttcc 428  Q
    |||| ||||||||||||||||||||    
T  707 aatcgttgcctcaacttccttttcc 683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 1053 - 991
Alignment:
Q  91 atgaagtctggtatatcctcagaaaagaagcagcagcatgatatacgtgaaagtgcatcacat 153  Q
    |||||| ||||||||||||||||||||||| |  ||||||||||| | |||||| ||||||||    
T  1053 atgaagcctggtatatcctcagaaaagaagaataagcatgatataagggaaagtacatcacat 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 1107 - 1057
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaa 66  Q
    ||||||||||||||||||||| |||| |||||||| | ||| |||||||||    
T  1107 atattcggtcttagctctcttaaatatctaaatatgtctggatgttccaaa 1057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 204 - 428
Target Start/End: Complemental strand, 6653 - 6429
Alignment:
Q  204 gttgccttccttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggcta 303  Q
    |||||||| ||| |||| ||||| ||||||||||||  ||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||    
T  6653 gttgccttgctttcgtattttatattgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggcta 6554  T
Q  304 gaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttgg 403  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  6553 gaaagattaaatttagggggaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttgg 6454  T
Q  404 aatctttgcctcaacttccttttcc 428  Q
    |||| ||||||||||||||||||||    
T  6453 aatcgttgcctcaacttccttttcc 6429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 6799 - 6737
Alignment:
Q  91 atgaagtctggtatatcctcagaaaagaagcagcagcatgatatacgtgaaagtgcatcacat 153  Q
    |||||| ||||||||||||||||||||||| |  ||||||||||| | |||||| ||||||||    
T  6799 atgaagcctggtatatcctcagaaaagaagaataagcatgatataagggaaagtacatcacat 6737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 6853 - 6803
Alignment:
Q  16 atattcggtcttagctctcttcaatacctaaatatatgtggctgttccaaa 66  Q
    ||||||||||||||||||||| |||| |||||||| | ||| |||||||||    
T  6853 atattcggtcttagctctcttaaatatctaaatatgtctggatgttccaaa 6803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 214 - 432
Target Start/End: Original strand, 17440638 - 17440856
Alignment:
Q  214 ttgcgtagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaa 313  Q
    |||| ||| |||| |||||||||| | |||||||| || ||||||  ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  17440638 ttgcatagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaa 17440737  T
Q  314 atttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcc 413  Q
    |||||| |||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  17440738 atttagggggaaatgattttgcgacactacctagcctgaggaagctttcgaaacttgtatatttaaatttgcagcattgcaagttgttggaatctttgcc 17440837  T
Q  414 tcaacttccttttcctacc 432  Q
    |||||||||||||||||||    
T  17440838 tcaacttccttttcctacc 17440856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 281 - 428
Target Start/End: Original strand, 31498873 - 31499020
Alignment:
Q  281 caattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaa 380  Q
    |||||| ||||||||||||| |||||   |||||||||| ||||||| | |||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  31498873 caattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcctgagggacctttccaaacttgtatgtttaaa 31498972  T
Q  381 tttggagcattgcaaattgttggaatctttgcctcaacttccttttcc 428  Q
     || || |||||||||||||||||||||||||||||||||||||||||    
T  31498973 cttagaacattgcaaattgttggaatctttgcctcaacttccttttcc 31499020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 261 - 431
Target Start/End: Complemental strand, 31157420 - 31157250
Alignment:
Q  261 tctaagccatgtgcctgatacaattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctt 360  Q
    ||||||| || | |||||| |||||| |||| ||| | | ||||||||||||||| ||| ||| ||| ||||||||||| | |||||||||||| |||||    
T  31157420 tctaagctatctccctgatgcaattggatgtctacttcgactagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagggagctt 31157321  T
Q  361 tccaaacttgtatatttaaatttggagcattgcaaattgttggaatctttgcctcaacttccttttcctac 431  Q
    |||||||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  31157320 tccaaacttgtatatttaaacttggagcattgcaagcttttggaatctttgcctcaacttccttttcctac 31157250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 281 - 431
Target Start/End: Complemental strand, 31148486 - 31148336
Alignment:
Q  281 caattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaa 380  Q
    |||||| | |||||| ||||||||||||||||||| ||| ||||||| ||||||||||  |||||||||| |||||||| |||| ||||| |||||||||    
T  31148486 caattggacgtttacgttggctagaaagattaaatctagggggaaacaattttgtgacggtacctagccttaggaagctatccagacttgcatatttaaa 31148387  T
Q  381 tttggagcattgcaaattgttggaatctttgcctcaacttccttttcctac 431  Q
     ||| ||||||| || |||||| |||| |||||||||||||||||| ||||    
T  31148386 cttgcagcattgtaagttgttgaaatcgttgcctcaacttccttttgctac 31148336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 31504032 - 31504153
Alignment:
Q  310 ttaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttggaatctt 409  Q
    ||||| |||| ||||||  ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  31504032 ttaaacttagggggaaataattttgtgacagtacctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaaactgttggaatctt 31504131  T
Q  410 tgcctcaacttccttttcctac 431  Q
    |||||   ||||||| ||||||    
T  31504132 tgcctgttcttccttctcctac 31504153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 431
Target Start/End: Original strand, 31478818 - 31478968
Alignment:
Q  281 caattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaa 380  Q
    |||||| |||| || ||||| |||||  ||||||||||| ||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||     
T  31478818 caattggatgtctatattggttagaagcattaaatttagggggaaacaattttgtgacagtacctagtctgagggagctttcaaaacttgtatatttaag 31478917  T
Q  381 tttggagcattgcaaattgttggaatctttgcctcaacttccttttcctac 431  Q
     || |||||||||||  ||||| |||||||||||  |||||||| ||||||    
T  31478918 cttagagcattgcaagctgttgaaatctttgcctgtacttccttctcctac 31478968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 31472411 - 31472462
Alignment:
Q  329 attttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaa 380  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  31472411 attttgtgacagtacctagcccgagggagctttccaaacttgtatatttaaa 31472462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 395
Target Start/End: Original strand, 31491627 - 31491725
Alignment:
Q  297 ttggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaa 395  Q
    |||| |||||||| ||||||||  ||||||| ||||||| ||||| ||||||||  || | | ||| | ||||| ||| ||||||||||||||||||||    
T  31491627 ttggttagaaagactaaatttaaggggaaacaattttgtcacattgcctagcctccgggatcattctagacttgaatacttaaatttggagcattgcaa 31491725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 31526574 - 31526524
Alignment:
Q  297 ttggctagaaagattaaatttagcgggaaacgattttgtgacattacctag 347  Q
    |||| |||||||||||||||||| ||||||| ||||||||||||| |||||    
T  31526574 ttggttagaaagattaaatttagggggaaacaattttgtgacattgcctag 31526524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 31017706 - 31017634
Alignment:
Q  306 aagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatattta 378  Q
    |||||||  |||| |||||||| ||||||||||  | ||||| || ||| ||||||| |||||||||||||||    
T  31017706 aagattagttttatcgggaaacaattttgtgactctgcctagtctcagggagctttctaaacttgtatattta 31017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 6785236 - 6785354
Alignment:
Q  305 aaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgcaaattgttgga 404  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||| | ||||||||||||| ||||||||||| ||||| || ||||| |||||| |    
T  6785236 aaagattaaatttagggggaaaccattttgtgacattgcctagcctgaaggagctttccaaactcgtatatttaaacttggatcactgcaagttgttgaa 6785335  T
Q  405 atctttgcctcaacttcct 423  Q
    || ||||||| | ||||||    
T  6785336 atatttgcctgatcttcct 6785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University