View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_low_4 (Length: 444)
Name: NF19886_low_4
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 77 - 435
Target Start/End: Original strand, 24948490 - 24948846
Alignment:
| Q |
77 |
tataaatggatgtacatataaacnnnnnnnnatgttattgatggttatttataaaactctttattcactataatttctttaaaatatcagcttatcttat |
176 |
Q |
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| T |
24948490 |
tataaatggatgtacatataaactttttt--atgttattgatggttatttataaaactctttattcactataatttctttaaaatatcagcttatcttat |
24948587 |
T |
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| Q |
177 |
atgtagtttatcactccttcttttcctttttaattgttgtgtttgcaagaaagttttgttcatatttagttgtcatttttaaagtttaatgaaatattga |
276 |
Q |
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| T |
24948588 |
atgtagtttatcactccttcttttcctttttaattgttgtgtttgcaagaaagttttgttcatatttagttgtcatttttaaagttcaatgaaacattaa |
24948687 |
T |
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| Q |
277 |
tcgttattttgtcaataatacccttagttattttttaagagagaaaagtagatgaaataagattataaatggttaaatgtatcatagaaaaaagataaat |
376 |
Q |
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| T |
24948688 |
ttgttattttgtcaataatacccttagttattttttaagagagaaaagtagatgaaataagattataaatgattaaatgtatcatagaaaaaagataaat |
24948787 |
T |
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| Q |
377 |
aattatatgaaaagtaacaaaacttatatgttgttatgaaaagtctcaaatagtattat |
435 |
Q |
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| T |
24948788 |
aatcatatgaaaagtaacaaaacttatatgttgttatgaaaagtctcaaatagtattat |
24948846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 24942848 - 24942901
Alignment:
| Q |
19 |
aatttgtcgaaggtgattgacaatgttttgagttggggcaagattcattccctg |
72 |
Q |
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| T |
24942848 |
aatttgtcgaaggtgattgacaatgttttgagttggggcaagattcattccctg |
24942901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 3036413 - 3036518
Alignment:
| Q |
233 |
tgttcatatttagttgtcatttttaaagtttaatgaaatattgatcgttattttgtcaataatacccttagttatttttta-agagagaaaagtagatga |
331 |
Q |
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|||| ||||||| |||||| ||| ||||||||||| |||||| | |||||||| | ||| |||||||||| |||| ||| ||||||||| || |||| |
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| T |
3036413 |
tgtttatatttaattgtcactttcaaagtttaatgtaatattaaatgttattttaccgatattacccttagtaatttattatagagagaaa--tatatga |
3036510 |
T |
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| Q |
332 |
aataagat |
339 |
Q |
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|||||||| |
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| T |
3036511 |
aataagat |
3036518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 309
Target Start/End: Complemental strand, 41480710 - 41480631
Alignment:
| Q |
230 |
ttttgttcatatttagttgtcatttttaaagtttaatgaaatattgatcgttattttgtcaataatacccttagttattt |
309 |
Q |
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|||||||| |||| |||||||||||| |||||| |||| |||||| | || ||||||||||||||||||||||||||| |
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| T |
41480710 |
ttttgttcctattaagttgtcattttgaaagttcaatgcaatattaactattgttttgtcaataatacccttagttattt |
41480631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 19603590 - 19603529
Alignment:
| Q |
246 |
ttgtcatttttaaagtttaatgaaatattgatcgttattttgtcaataatacccttagttat |
307 |
Q |
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| T |
19603590 |
ttgtcgtttttaaagtttaatataatattaattattattttgtcaataatgcccttatttat |
19603529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 46750479 - 46750568
Alignment:
| Q |
314 |
agagagaaaagtagatgaaataagattataaatggttaaatgtatcatagaaaaaagataaataattatatgaaaagtaacaaaacttat |
403 |
Q |
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| T |
46750479 |
agagaaaaaaatagataaaataaaatattaaatgattaaaagtattatatataaaagataaataattgtattaaaagtaataaaatttat |
46750568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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