View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19886_low_5 (Length: 438)

Name: NF19886_low_5
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19886_low_5
NF19886_low_5
[»] chr4 (46 HSPs)
chr4 (1-289)||(7790120-7790402)
chr4 (1-289)||(7771435-7771717)
chr4 (1-289)||(7237482-7237767)
chr4 (303-438)||(7771069-7771204)
chr4 (303-438)||(7789754-7789889)
chr4 (303-438)||(7237998-7238133)
chr4 (303-438)||(7765286-7765421)
chr4 (303-438)||(7774107-7774242)
chr4 (128-289)||(7823003-7823155)
chr4 (303-438)||(7877385-7877520)
chr4 (302-438)||(7904697-7904833)
chr4 (50-271)||(7877801-7878013)
chr4 (50-186)||(7773619-7773755)
chr4 (303-435)||(7786111-7786243)
chr4 (128-289)||(7800671-7800823)
chr4 (303-438)||(7907990-7908128)
chr4 (310-438)||(7822634-7822762)
chr4 (128-289)||(7813514-7813663)
chr4 (310-438)||(7800302-7800430)
chr4 (42-271)||(7908392-7908612)
chr4 (347-438)||(45366540-45366634)
chr4 (372-438)||(48862906-48862975)
chr4 (310-438)||(7813145-7813273)
chr4 (79-153)||(48705202-48705276)
chr4 (217-271)||(49048527-49048581)
chr4 (220-267)||(7786523-7786570)
chr4 (387-438)||(45372419-45372470)
chr4 (45-155)||(7786626-7786736)
chr4 (371-436)||(33134169-33134237)
chr4 (373-438)||(49041486-49041551)
chr4 (386-438)||(48891074-48891126)
chr4 (386-438)||(50251169-50251221)
chr4 (220-267)||(7765701-7765748)
chr4 (217-274)||(48852736-48852793)
chr4 (114-155)||(48852849-48852890)
chr4 (124-153)||(48870718-48870747)
chr4 (124-153)||(48886404-48886433)
chr4 (128-165)||(50250640-50250677)
chr4 (371-438)||(33133702-33133772)
chr4 (217-269)||(37826948-37827000)
chr4 (386-438)||(48156788-48156840)
chr4 (371-438)||(48170932-48171002)
chr4 (366-438)||(48870207-48870279)
chr4 (366-438)||(48885893-48885965)
chr4 (217-261)||(48891495-48891539)
chr4 (57-165)||(50669237-50669345)
[»] chr8 (6 HSPs)
chr8 (353-438)||(15348527-15348612)
chr8 (384-432)||(4032275-4032323)
chr8 (402-438)||(12199972-12200008)
chr8 (402-438)||(12444400-12444436)
chr8 (398-438)||(12194966-12195006)
chr8 (398-438)||(12439394-12439434)
[»] chr1 (2 HSPs)
chr1 (372-438)||(24309842-24309908)
chr1 (371-438)||(24340079-24340146)
[»] scaffold0508 (1 HSPs)
scaffold0508 (366-438)||(11927-11999)
[»] chr5 (5 HSPs)
chr5 (303-438)||(1812090-1812219)
chr5 (372-438)||(29695817-29695883)
chr5 (303-368)||(1811856-1811921)
chr5 (217-263)||(179112-179158)
chr5 (386-438)||(29687716-29687768)
[»] chr3 (4 HSPs)
chr3 (310-432)||(11006247-11006369)
chr3 (310-432)||(11024822-11024944)
chr3 (312-432)||(11015812-11015932)
chr3 (380-438)||(47452262-47452320)
[»] chr6 (3 HSPs)
chr6 (217-271)||(21015882-21015936)
chr6 (217-265)||(21979586-21979634)
chr6 (114-155)||(21015992-21016033)
[»] chr7 (1 HSPs)
chr7 (217-267)||(48883881-48883931)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 7790402 - 7790120
Alignment:
Q  1 aattctccaaatacccacaaactataaagatatccattgttaaaatcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7790402 aattctccaaatacccacaaactataaagatatccattgttaaaatcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaa 7790303  T
Q  101 tgacatccagttttaaatcacggcgataagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaatgacaacataagggaagtg 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7790302 tgacattcagttttaaatcacggcgataagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaacgacaacataagggaagtg 7790203  T
Q  201 agtattaccatcaacatcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtgatgaaacatgggaaaattcaacca 289  Q
    ||||||||||      ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7790202 agtattacca------tcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatgaaacatgggaaaattcaacca 7790120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 7771717 - 7771435
Alignment:
Q  1 aattctccaaatacccacaaactataaagatatccattgttaaaatcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7771717 aattctccaaatacccacaaactataaagatatccattgttaaaatcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaa 7771618  T
Q  101 tgacatccagttttaaatcacggcgataagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaatgacaacataagggaagtg 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  7771617 tgacattcagttttaaatcacggcgataagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaacgacgacataagggaagtg 7771518  T
Q  201 agtattaccatcaacatcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtgatgaaacatgggaaaattcaacca 289  Q
    ||||| ||      ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7771517 agtatgac------catcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatgaaacatgggaaaattcaacca 7771435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 7237482 - 7237767
Alignment:
Q  1 aattctccaaatacccacaaactataaagatatccattgttaaaatcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaa 100  Q
    ||||||||||||||||||| | |||||||| ||| || || |||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||| |    
T  7237482 aattctccaaatacccacatattataaagaaatctatggtcaaaatcacttggaacaggcatctcaaacgttttcttttccattaaatcaagcgcaacta 7237581  T
Q  101 tgacatccagttttaaatcacggcgataagccaaccaatgaatagccccattaaatagaaacccttttctctgagaagg------aatgacaacataagg 194  Q
    |||||||||  | |||||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||| |||||      ||||| ||| |||||    
T  7237582 tgacatccaaatctaaatcacggcgataagcaagccaatgaataaccccattaaatagaaacccttttccctgggaaggaacgacaatgagaacgtaagg 7237681  T
Q  195 gaagtgagtattaccatcaacatcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtgatgaaacatgggaaaattcaacca 289  Q
    ||| ||| ||    ||     |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  7237682 gaaatgaata----ca-----atcaatttctttccacatattatctctaaaagagaaaacctccaaatgtgatgaaacatgggaaaatacaacca 7237767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 7771204 - 7771069
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtg 402  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  7771204 ttaagaaatgcttcaaaatctatagatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtg 7771105  T
Q  403 aattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||||||||||||||||||||||||||||||||||    
T  7771104 aattttcaaagtgaggatcagagataagagaaaacc 7771069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 7789889 - 7789754
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtg 402  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  7789889 ttaagaaatgcttcaaaatctatagatcaaatttcatgagattgagttgatatacataaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtg 7789790  T
Q  403 aattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||||||||||||||||| ||||||| ||||||||    
T  7789789 aattttcaaagtgaggatcggagataaaagaaaacc 7789754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 438
Target Start/End: Original strand, 7237998 - 7238133
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtg 402  Q
    |||||||||||||||  ||| || ||||||||||||||||||  || ||||||||||||||| |||| ||| || ||||| |||||| |||| |||||||    
T  7237998 ttaagaaatgcttcaggatcgattgatcgaatttcatgagataaaggtgatatgcataaaaacctacgagtatgcgttgcagaggtatgttggaaatgtg 7238097  T
Q  403 aattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||| |||||||||| |||||||||||||||||||    
T  7238098 aatttgcaaagtgagggtcagagataagagaaaacc 7238133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 7765421 - 7765286
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtg 402  Q
    ||||||||||| |||||||| || |||||||||||| ||||| ||| ||| |||||||||||||||| ||||||| ||||   | ||||||| |||||||    
T  7765421 ttaagaaatgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgttttgcatggttaagttggaaatgtg 7765322  T
Q  403 aattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||| ||||||||||||||||||||| ||||||||    
T  7765321 aatttgcaaagtgaggatcagagataatagaaaacc 7765286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 438
Target Start/End: Original strand, 7774107 - 7774242
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtg 402  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| | || ||||  |||||| |||| || ||| |||||||||||||    
T  7774107 ttaagaaatgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtg 7774206  T
Q  403 aattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||| |||| || ||||||||||||||||||||||    
T  7774207 aatttgcaaaatggggatcagagataagagaaaacc 7774242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 128 - 289
Target Start/End: Complemental strand, 7823155 - 7823003
Alignment:
Q  128 aagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaatgacaacataagggaagtgagtattaccatcaacatcaatttcttt 227  Q
    |||||| |||||||||||  ||||||||||||||||||||||| |||||||||  ||||||||||| || |||||||          |||||||||||||    
T  7823155 aagccagccaatgaatagagccattaaatagaaacccttttctatgagaaggatcgacaacataagcgatgtgagtac---------catcaatttcttt 7823065  T
Q  228 ccacgtattatctctaaacgagaaaacctccaaatgtgatgaaacatgggaaaattcaacca 289  Q
    ||| |||||||||  |||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  7823064 ccaggtattatctggaaacgagaaaacctccnaatgtgacgaaacatgggaaaatacaacca 7823003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 7877520 - 7877385
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtg 402  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| | || ||||  |||||| |||| || ||| |||||||||||||    
T  7877520 ttaagaaatgcttcaaaacctattgatcgaatttcatgagatagaggtgatatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtg 7877421  T
Q  403 aattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||| |||| |  ||||||||||||||||||||||    
T  7877420 aatttgcaaaattgggatcagagataagagaaaacc 7877385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 438
Target Start/End: Complemental strand, 7904833 - 7904697
Alignment:
Q  302 attaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgt 401  Q
    |||||||||||||||||||| ||  ||| |||||||||||||| ||  ||||||||| | || ||||  |||||  | ||||| ||| ||||||||||||    
T  7904833 attaagaaatgcttcaaaatataaagattgaatttcatgagatagatatgatatgcacataattctaggagtgttagctgcggcggtgagttgaaaatgt 7904734  T
Q  402 gaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7904733 gaatttgcaaagtgaggatcagagataagagaaaacc 7904697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 271
Target Start/End: Complemental strand, 7878013 - 7877801
Alignment:
Q  50 ttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaatgaca-tccagttttaaatcacggcgataagccaaccaatgaatagccc 148  Q
    |||||| |||||||||||||| |||||| |||||||||||||| |||| ||||||| ||||   | |||| ||| ||  ||||||||||||||| | |||    
T  7878013 ttggaagaggcatctcaaacaatttcttttccattaaatcaaaggtaagaatgacaatccaacct-aaattacgacgcaaagccaaccaatgaacaaccc 7877915  T
Q  149 cattaaatagaaacccttttctctgagaaggaatgacaacataagggaagtgagtattaccatcaacatcaatttctttccacgtattatctctaaacga 248  Q
    |||||||||| |||||||||||  ||||||| |||||| ||||||||||| ||||| |          ||| |||||||||| |||||||||||||| ||    
T  7877914 cattaaatagcaacccttttctgcgagaagggatgacagcataagggaagggagtact---------ctcagtttctttccatgtattatctctaaatga 7877824  T
Q  249 gaaaacctccaaatgtgatgaaa 271  Q
    ||||| || |||||||| |||||    
T  7877823 gaaaaacttcaaatgtgttgaaa 7877801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 7773619 - 7773755
Alignment:
Q  50 ttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaatgacatccagttttaaatcacggcgataagccaaccaatgaatagcccc 149  Q
    |||||| |||||||||||||| |||| | |||||||||||||| | |||||| |||| |     ||||||||| ||  ||||||||||||||||||||||    
T  7773619 ttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaattacattccaacgtaaatcacgacgcaaagccaaccaatgaatagcccc 7773718  T
Q  150 attaaatagaaacccttttctctgagaaggaatgaca 186  Q
    |||||||||||||||||||||  ||||||| ||||||    
T  7773719 attaaatagaaacccttttctgcgagaagggatgaca 7773755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 303 - 435
Target Start/End: Complemental strand, 7786243 - 7786111
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtg 402  Q
    ||||||||||| |||||||| || |||||||||||| ||||| ||| ||| |||||||||||||||| ||||||| |||    | ||||||| |||||||    
T  7786243 ttaagaaatgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgttttgtaaggttaagttggaaatgtg 7786144  T
Q  403 aattttcaaagtgaggatcagagataagagaaa 435  Q
    ||||| |||| |||||||||||||||| |||||    
T  7786143 aatttgcaaattgaggatcagagataatagaaa 7786111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 128 - 289
Target Start/End: Complemental strand, 7800823 - 7800671
Alignment:
Q  128 aagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaatgacaacataagggaagtgagtattaccatcaacatcaatttcttt 227  Q
    |||||| |||||||||||||||||||||||| ||||||||| | |||||||||  |||| | |||   |||| ||||          | |||||||||||    
T  7800823 aagccagccaatgaatagccccattaaatagcaacccttttatatgagaaggatcgacagcgtaatcaaagttagtac---------cgtcaatttcttt 7800733  T
Q  228 ccacgtattatctctaaacgagaaaacctccaaatgtgatgaaacatgggaaaattcaacca 289  Q
    ||| |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||    
T  7800732 ccaggtattatctggaaacgagaaaacctccaaatgtgatgaaacatgggaaaatacaacca 7800671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 7908128 - 7907990
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagt---gtgtgttgcggaggtaagttgaaaat 399  Q
    ||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||  | | || |||| |||    |||| |||| ||||||||||||||||    
T  7908128 ttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgtgttttgcagaggtaagttgaaaat 7908029  T
Q  400 gtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||||| |||| || ||| ||||||||||||||||||    
T  7908028 gtgaatttgcaaaatggggagcagagataagagaaaacc 7907990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 7822762 - 7822634
Alignment:
Q  310 atgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttc 409  Q
    |||| |||| |||||| ||||||||||||||||||  || ||||| || || || ||||| ||| |||||||| | ||| | |||||| ||||||||| |    
T  7822762 atgcatcaacatctatagatcgaatttcatgagataaagatgataagcctataattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgc 7822663  T
Q  410 aaagtgaggatcagagataagagaaaacc 438  Q
    |||||| ||||||||||||||||||||||    
T  7822662 aaagtggggatcagagataagagaaaacc 7822634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 289
Target Start/End: Complemental strand, 7813663 - 7813514
Alignment:
Q  128 aagccaaccaatgaatagccccattaaatagaaacccttttctctgagaaggaatgacaacataagggaagtgagtattaccatcaacatcaatttcttt 227  Q
    |||||| ||||||||||||| |||||||||||||||||||||| |||||||||    || | |||| ||||| ||||          | |||||||||||    
T  7813663 aagccagccaatgaatagcctcattaaatagaaacccttttctatgagaaggat---cagcgtaagcgaagttagtac---------cttcaatttcttt 7813576  T
Q  228 ccacgtattatctctaaacgagaaaacctccaaatgtgatgaaacatgggaaaattcaacca 289  Q
    ||| |||||||||  ||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  7813575 ccaggtattatctggaaaggagaaaacctccaaatgtgacgaaacatgggaaaatacaacca 7813514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 7800430 - 7800302
Alignment:
Q  310 atgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttc 409  Q
    |||| |||| |||||| ||||||||||||||||||  || ||||| || || || ||||| ||| |||||||| | ||| | |||||| ||||||||| |    
T  7800430 atgcatcaacatctatagatcgaatttcatgagataaagatgataagcctataattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgc 7800331  T
Q  410 aaagtgaggatcagagataagagaaaacc 438  Q
    |||| | |||||||||| |||||||||||    
T  7800330 aaagcggggatcagagacaagagaaaacc 7800302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 271
Target Start/End: Complemental strand, 7908612 - 7908392
Alignment:
Q  42 aaaatcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaatgacatccagttttaaatcacggcgataagccaaccaatga 141  Q
    |||||||||||||| ||| ||||||||||  ||| | |||||||||||||| | ||||||||||  ||    ||||||||| ||  ||||||||||||||    
T  7908612 aaaatcacttggaataggtatctcaaacaacttcctttccattaaatcaaaggcaacaatgacagtcaaacctaaatcacgacgtaaagccaaccaatga 7908513  T
Q  142 atagccccattaaatagaaacccttttctctgagaaggaatgacaacataagggaagtgagtattaccatcaacatcaatttctttccacgtattatctc 241  Q
    ||| | ||||||||||| || |||| |||   |||||  | |||| ||||||||||||    |||||      | |||||||||||||| ||||||||||    
T  7908512 ataacaccattaaatagcaatccttctctgcaagaagagaggacaccataagggaagt---aattac------cctcaatttctttccatgtattatctc 7908422  T
Q  242 taaacgagaaaacctccaaatgtgatgaaa 271  Q
    |||  ||||||| || |||||||| |||||    
T  7908421 taactgagaaaaacttcaaatgtgttgaaa 7908392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 45366540 - 45366634
Alignment:
Q  347 agttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatc---agagataagagaaaacc 438  Q
    |||||||||| |||||| ||||| ||||||| |||||| || ||||||||||||||||||| ||||||| | |||   |||||||||||||||||    
T  45366540 agttgatatgaataaaactctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaacc 45366634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 48862975 - 48862906
Alignment:
Q  372 gtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatc---agagataagagaaaacc 438  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||   |||||||||||||||||    
T  48862975 gtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaacc 48862906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 7813273 - 7813145
Alignment:
Q  310 atgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttc 409  Q
    |||| |||| |||||| ||||||||||||||||||  || ||||| || || ||  |||| ||| |||||||| | ||| | |||||| ||||| ||| |    
T  7813273 atgcatcaacatctatcgatcgaatttcatgagataaagatgataagcctataatcctacgagtatgtgttgcagtggtgaattgaaattgtgactttgc 7813174  T
Q  410 aaagtgaggatcagagataagagaaaacc 438  Q
    |||||| || |||||||||||||||||||    
T  7813173 aaagtggggttcagagataagagaaaacc 7813145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 48705202 - 48705276
Alignment:
Q  79 tccattaaatcaaacgtaacaatgacatccagttttaaatcacggcgataagccaaccaatgaatagccccatta 153  Q
    |||||||||||||| | |||||| ||||||  |  ||||||| | ||||||||||||||||||||||||||||||    
T  48705202 tccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccatta 48705276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 49048527 - 49048581
Alignment:
Q  217 tcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtgatgaaa 271  Q
    ||||||||||||||  |||||||||| |||||||||| |||||||||||||||||    
T  49048527 tcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgatgaaa 49048581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 7786570 - 7786523
Alignment:
Q  220 atttctttccacgtattatctctaaacgagaaaacctccaaatgtgat 267  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  7786570 atttctttccaagtattgtctttaaacgagaaaacctccaaatgtgat 7786523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 45372419 - 45372470
Alignment:
Q  387 gtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||| |||||||||||||||| |||| |||||||||||||||| ||||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaacc 45372470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 7786736 - 7786626
Alignment:
Q  45 atcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaatgacatccagttttaaatcacggcgataagccaaccaatgaata 144  Q
    |||| |||||| |||||||||||||| | || | ||| ||||||||||   ||||||||||||||    || |||||| ||  ||| |||||||||||||    
T  7786736 atcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgacatccaaagctatatcacgacgcgaagacaaccaatgaata 7786637  T
Q  145 gccccattaaa 155  Q
    |||||||||||    
T  7786636 gccccattaaa 7786626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 436
Target Start/End: Original strand, 33134169 - 33134237
Alignment:
Q  371 agtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatc---agagataagagaaaa 436  Q
    ||||||||||| || ||| | |||||||||||||||| |||||||||||||   |||||||||||||||    
T  33134169 agtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaa 33134237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 438
Target Start/End: Original strand, 49041486 - 49041551
Alignment:
Q  373 tgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||| |||| || |||||||| |||||| |||||| |||| || ||||||||||||||||||||||    
T  49041486 tgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaacc 49041551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 48891126 - 48891074
Alignment:
Q  386 ggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||||||||||||| |||||| |||| |||||||| |||| |||||||||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaacc 48891074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 50251169 - 50251221
Alignment:
Q  386 ggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||||||||||||  ||||| || |||| ||||||||||||||||||||||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacc 50251221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 7765748 - 7765701
Alignment:
Q  220 atttctttccacgtattatctctaaacgagaaaacctccaaatgtgat 267  Q
    ||||||||||| ||||| ||| |||||||||||| |||||||||||||    
T  7765748 atttctttccaagtattgtctttaaacgagaaaaactccaaatgtgat 7765701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 48852793 - 48852736
Alignment:
Q  217 tcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtgatgaaacat 274  Q
    |||||||||||||| | |||| |||| || ||||||| ||| ||||||||||||||||    
T  48852793 tcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacat 48852736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 48852890 - 48852849
Alignment:
Q  114 taaatcacggcgataagccaaccaatgaatagccccattaaa 155  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  48852890 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 48852849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 48870747 - 48870718
Alignment:
Q  124 cgataagccaaccaatgaatagccccatta 153  Q
    ||||||||||||||||||||||||||||||    
T  48870747 cgataagccaaccaatgaatagccccatta 48870718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 48886433 - 48886404
Alignment:
Q  124 cgataagccaaccaatgaatagccccatta 153  Q
    ||||||||||||||||||||||||||||||    
T  48886433 cgataagccaaccaatgaatagccccatta 48886404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 50250640 - 50250677
Alignment:
Q  128 aagccaaccaatgaatagccccattaaatagaaaccct 165  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  50250640 aagccaaccaatgaatagccccattaaagagaacccct 50250677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 33133772 - 33133702
Alignment:
Q  371 agtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatc---agagataagagaaaacc 438  Q
    ||||||||||| || ||| | ||||||||| |||||| |||||||| ||||   |||||||||||||||||    
T  33133772 agtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaacc 33133702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 37826948 - 37827000
Alignment:
Q  217 tcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtgatga 269  Q
    ||||||||| |||| | ||||||| | |||||||||| |||||||||||||||    
T  37826948 tcaatttctctccatgaattatctttcaacgagaaaaactccaaatgtgatga 37827000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 48156788 - 48156840
Alignment:
Q  386 ggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||| ||||||||| |||||| |||| |||| ||| ||||||||||||||||    
T  48156788 ggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaacc 48156840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 48170932 - 48171002
Alignment:
Q  371 agtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatc---agagataagagaaaacc 438  Q
    ||||||||||  || ||||| ||||||||| |||||| |||||||||||||   ||||||||||| |||||    
T  48170932 agtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaacc 48171002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 48870279 - 48870207
Alignment:
Q  366 ctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||| ||||||||||||||  || || ||||||||||||||| ||||  | ||||| ||||||||| ||||||    
T  48870279 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaacc 48870207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 48885965 - 48885893
Alignment:
Q  366 ctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||| ||||||||||||||  || || ||||||||||||||| ||||  | ||||| ||||||||| ||||||    
T  48885965 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaacc 48885893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 48891539 - 48891495
Alignment:
Q  217 tcaatttctttccacgtattatctctaaacgagaaaacctccaaa 261  Q
    ||||||||||||||| |||||||||| || ||||||| |||||||    
T  48891539 tcaatttctttccacatattatctctcaatgagaaaaactccaaa 48891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 50669345 - 50669237
Alignment:
Q  57 aggcatctcaaacattttcttctccattaaatcaaacgtaacaatgacatccagttttaaatcacggcgataagccaaccaatgaatagccccattaaat 156  Q
    |||||| || |||| |||| | ||||| |||||||| | ||||||||||  ||  |||||||||   ||| |||||||||||| ||||||| |||||||     
T  50669345 aggcatgtctaacagtttcctttccatcaaatcaaaggcaacaatgacaaacacctttaaatcataacgaaaagccaaccaataaatagcctcattaaag 50669246  T
Q  157 agaaaccct 165  Q
    |||| ||||    
T  50669245 agaacccct 50669237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 353 - 438
Target Start/End: Complemental strand, 15348612 - 15348527
Alignment:
Q  353 tatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||| |||| ||||| |||||||||||||| ||||| |||||||||||||||| | |||| |||||||||||||||||||||||    
T  15348612 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacc 15348527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 4032275 - 4032323
Alignment:
Q  384 gaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagag 432  Q
    ||||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  4032275 gaggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagag 4032323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 12200008 - 12199972
Alignment:
Q  402 gaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||| ||||||||||||||||||||||||||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaacc 12199972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 12444436 - 12444400
Alignment:
Q  402 gaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||| ||||||||||||||||||||||||||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaacc 12444400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 12195006 - 12194966
Alignment:
Q  398 atgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||||||| ||||||| ||||||||||||||||| ||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataacc 12194966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 12439434 - 12439394
Alignment:
Q  398 atgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||||||| ||||||| ||||||||||||||||| ||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataacc 12439394  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 24309908 - 24309842
Alignment:
Q  372 gtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||||||||  || ||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  24309908 gtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaacc 24309842  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 24340146 - 24340079
Alignment:
Q  371 agtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||||||||| |  |||| |||||| ||||||||| ||||||||  |||||||||||| |||||||    
T  24340146 agtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaacc 24340079  T

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Target: scaffold0508 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 11999 - 11927
Alignment:
Q  366 ctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||| |||||||||||  || ||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  11999 ctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaacc 11927  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 1812219 - 1812090
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtg 402  Q
    ||||||||||| |||||||| || | |||||||| | |||||| || ||| |||||||||||||||  ||||||||||      ||||||||||||||      
T  1812219 ttaagaaatgcatcaaaatcgataggtcgaatttgaggagattaagctgaaatgcataaaaatctaagagtgtgtgtt------gtaagttgaaaatgat 1812126  T
Q  403 aattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||| ||||||| ||||  ||||||||||||||||    
T  1812125 aatttgcaaagtggggatttgagataagagaaaacc 1812090  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 29695883 - 29695817
Alignment:
Q  372 gtgtgtgttgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    |||||||| |||| |||||||||||||||||||||| |||||||||| | ||| |||||||| ||||    
T  29695883 gtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataacc 29695817  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 1811856 - 1811921
Alignment:
Q  303 ttaagaaatgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatcta 368  Q
    ||||||||||| |||||||| || |||||||||||| |||||  |||||| ||| |||||||||||    
T  1811856 ttaagaaatgcatcaaaatcgatagatcgaatttcaggagataaagttgaaatgtataaaaatcta 1811921  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 179158 - 179112
Alignment:
Q  217 tcaatttctttccacgtattatctctaaacgagaaaacctccaaatg 263  Q
    |||||||||||||| ||||||||||| || ||||||| |||||||||    
T  179158 tcaatttctttccatgtattatctctcaatgagaaaatctccaaatg 179112  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 29687768 - 29687716
Alignment:
Q  386 ggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||||||||||||| |||||| |||||||||| | ||| || ||||||||||    
T  29687768 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaacc 29687716  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 432
Target Start/End: Original strand, 11006247 - 11006369
Alignment:
Q  310 atgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttc 409  Q
    ||||||||||||||||||||||||||||| ||| | ||||||| ||| | | || ||||  ||||||||||   | || ||| | |||||| || ||| |    
T  11006247 atgcttcaaaatctatggatcgaatttcaagagctggagttgacatgaacacaattctattagtgtgtgttctagtggaaaggtcaaaatgcgattttgc 11006346  T
Q  410 aaagtgaggatcagagataagag 432  Q
    |||||||||||||||||||||||    
T  11006347 aaagtgaggatcagagataagag 11006369  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 432
Target Start/End: Original strand, 11024822 - 11024944
Alignment:
Q  310 atgcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttc 409  Q
    ||||||||||||||||||||||| ||||  ||| | ||||||| ||| | | || ||||  |||||||||||| | || ||||| |||||| || ||| |    
T  11024822 atgcttcaaaatctatggatcgagtttccagagctagagttgacatgaacacaattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgc 11024921  T
Q  410 aaagtgaggatcagagataagag 432  Q
    ||||| | |||||||||||||||    
T  11024922 aaagttatgatcagagataagag 11024944  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 432
Target Start/End: Original strand, 11015812 - 11015932
Alignment:
Q  312 gcttcaaaatctatggatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcggaggtaagttgaaaatgtgaattttcaa 411  Q
    ||||||||||| ||||||||| ||||| ||| | ||||||| ||| | | || ||||  |||||||||||| | || ||||| |||||| || ||| |||    
T  11015812 gcttcaaaatcaatggatcgagtttcaagagctagagttgacatgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaa 11015911  T
Q  412 agtgaggatcagagataagag 432  Q
    ||| | |||||||||||||||    
T  11015912 agttatgatcagagataagag 11015932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 47452262 - 47452320
Alignment:
Q  380 tgcggaggtaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaacc 438  Q
    ||||| |||||||| ||||||||  ||| ||||| ||||||||||||||||||||||||    
T  47452262 tgcggcggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaacc 47452320  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 21015936 - 21015882
Alignment:
Q  217 tcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtgatgaaa 271  Q
    ||||||||||||||| |||||||||| |||||||||| ||| || ||||||||||    
T  21015936 tcaatttctttccacctattatctctcaacgagaaaaactctaactgtgatgaaa 21015882  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 21979586 - 21979634
Alignment:
Q  217 tcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtg 265  Q
    ||||||| |||||| ||||||||||| || |||||||||||||||||||    
T  21979586 tcaatttgtttccaggtattatctctcaaagagaaaacctccaaatgtg 21979634  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 21016033 - 21015992
Alignment:
Q  114 taaatcacggcgataagccaaccaatgaatagccccattaaa 155  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  21016033 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 21015992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 48883931 - 48883881
Alignment:
Q  217 tcaatttctttccacgtattatctctaaacgagaaaacctccaaatgtgat 267  Q
    ||||||||||||||| |||||||||| || ||||||  |||||||||||||    
T  48883931 tcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 48883881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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