View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_low_8 (Length: 394)
Name: NF19886_low_8
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 2794940 - 2794575
Alignment:
| Q |
16 |
catataaccaatattcacaagtttctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaa |
115 |
Q |
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| T |
2794940 |
catataaccaatattcacaagtttctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaa |
2794841 |
T |
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| Q |
116 |
gacccatcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagtatccggcattgacccccatttt |
215 |
Q |
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| T |
2794840 |
gacccatcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagcatccggcgttgacccccatttt |
2794741 |
T |
|
| Q |
216 |
ccccaactccatcaccagttcccctatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794740 |
ccccaactccatcaccagttcccctatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctc |
2794641 |
T |
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| Q |
316 |
tatagtagaggctttcacaacatataactcctccaaaattgactccaaattcgaccccttcatctc |
381 |
Q |
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| T |
2794640 |
tatagtagaggctttcacagcatataactcctccaaaattgactccaaattcgaccccttcatctc |
2794575 |
T |
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Back To:
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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 29262440 - 29262277
Alignment:
| Q |
29 |
ttcacaagtttctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcg-gaagcctgtaagacccatcagga |
127 |
Q |
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|||| ||| |||||||||||||||| ||||||||||||||| || || |||||||| |||| |||||||||| ||| || |||| ||||||||||||||| |
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| T |
29262440 |
ttcaaaagcttctcattaggatcaaggggtttagccttcaatgctggaacatgaatctcttcataacctttt-tcgagatgcctataagacccatcagga |
29262342 |
T |
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| Q |
128 |
agatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaag |
192 |
Q |
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|| ||||||||| ||||| |||||| || |||||||||||||||| |||||||| |||||||| |
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| T |
29262341 |
aggtcacattttttctttgccataaataacccaccttgttcaaaagtgaggttatctaaatcaag |
29262277 |
T |
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