View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19886_low_9 (Length: 357)
Name: NF19886_low_9
Description: NF19886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19886_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 48925059 - 48924876
Alignment:
| Q |
163 |
acactaagctttttaagtgatccattgacttcgttaggaagcatattgcttcaaatttcagtaatttgggctgtaacccttgaaaatgttctgtggatac |
262 |
Q |
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| T |
48925059 |
acactaagctttttaagtgatccattgactttgttaggaagcatattgcttcaaatttcagtaatttgggctgtaacccttgaaaatgttctgtggatac |
48924960 |
T |
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| Q |
263 |
ttatctacataaatctgtgtaaccattgaaaaggtgctttattttcaagatggacactccttttctgaattgttgtttttaacc |
346 |
Q |
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| T |
48924959 |
ttatctacataaatctgtgtaaccattgaaaaggtgctttattttcaagatggacactccttttctgaattgttgtttttaacc |
48924876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 48925156 - 48925056
Alignment:
| Q |
17 |
caagagagctctaatggctgcgggaatggaaaatactgtgatacattttgcaaagaaagttgataaactgaggaatactccattaattgcttgacttaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48925156 |
caagagagctctaatggctgcgggaatggaaaatactgtgatacattttgcaaagaaagttgataaactgaggaatactccattaattgcttgacttaca |
48925057 |
T |
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| Q |
117 |
c |
117 |
Q |
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| T |
48925056 |
c |
48925056 |
T |
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