View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19887_low_1 (Length: 412)
Name: NF19887_low_1
Description: NF19887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19887_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 5378429 - 5378130
Alignment:
| Q |
1 |
taagtgtcaatatgacatttatatgtaaagaaaagacaattccacttggaagaaaactatcatccataaagaattctttactccaaaaacttaaattata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5378429 |
taagtgtcaatatgacatttatatgtaaagaacagacaattccacttggaagaaaactgtcatccataaagaattctttactccaaaaacttaaattata |
5378330 |
T |
|
| Q |
101 |
gaagaattcatgcaccaaaatacattttatttctaaaattaattattaacataacatgtgaaaaataagatggattaatatcaacgacatcaatgcttag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
5378329 |
gaagaattcatgcaccaaaatacattttatttctagaattaattattaacataacatgtgaaaaataagatgaattaat----acgacatcaatgcttag |
5378234 |
T |
|
| Q |
201 |
ttaagtattaacattagcagatgaattctttcaacaaaaacattagcagatgaaaaagtcaccttgtctttgaaaataataattagcagatgaattataa |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5378233 |
ttaagtattaacatcagcagatgaattctttcaacaaaaacattagcagatgaaaaagtcacattgtctttaaaaataataattagcagatgaattataa |
5378134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 19001269 - 19001013
Alignment:
| Q |
1 |
taagtgtcaatatgacatttatatgtaaagaaaagacaattccacttggaagaaaactatcatccataaagaattctttactccaaaaacttaaattata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19001269 |
taagtgtcaatatgacatttatatgtaaagaacaaacaattccacttggaaggaaactatcatccataaagaattctttactccaaaaacataaattata |
19001170 |
T |
|
| Q |
101 |
gaagaattcatgcaccaaaatacattttatttctaaaattaattattaacataacatgtgaaaaataagatggattaatatcaacgacatcaatgcttag |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
19001169 |
gaagaattcatgcaacaaaatacattttatttctagaattaattattaacataacatgtgaaaaataagatgaattaatatcagcgagatcaatgcttag |
19001070 |
T |
|
| Q |
201 |
ttaagtattaacattagcagatgaattctttcaacaaaaacattagcagatgaaaaa |
257 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19001069 |
ttaagtattaacattaggagatgaattctttcaacaaaaacattagcaaatgaaaaa |
19001013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 22324669 - 22324422
Alignment:
| Q |
2 |
aagtgtcaatatgacatttatatgtaaagaaaagacaattccacttggaagaaaactatcatccataaagaattctttactccaaaaacttaaattatag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| | |||||||||| |||||| |||| |
|
|
| T |
22324669 |
aagtgtcaatatgacatttatatgtaaagaacagacaattccacttggaagtaaagtatcatccataaagaagtttttactccaataacttattttat-- |
22324572 |
T |
|
| Q |
102 |
aagaattcatgcaccaaaatacattttatttctaaaattaattattaacataacatgtgaaaaataagatggattaatatcaacgacatcaatgcttagt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
22324571 |
-agaattcatgcaccaaaatacattttatttctagacttaattattaacgtaaaatgtgaaaaataagattaattaatat------cagcaatgcttagt |
22324479 |
T |
|
| Q |
202 |
taagtattaacattagcagatgaattctttcaaca----aaaacattagcagatgaa |
254 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
22324478 |
taaatattaacaatagcagatgaattctttcaaaaaaacaaaacattagcagatgaa |
22324422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 22679921 - 22679872
Alignment:
| Q |
2 |
aagtgtcaatatgacatttatatgtaaagaaaagacaattccacttggaa |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22679921 |
aagtgtcaatatgacatttatatgtaaagaacagacaattccacttggaa |
22679872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 23219884 - 23219650
Alignment:
| Q |
2 |
aagtgtcaatatgacatttatatgtaaagaaaagacaattccacttggaagaaaactatcatccataaagaattctttactccaaaaacttaaattatag |
101 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
23219884 |
aagtgtcaatatgatatttatatgtaaagaacatacaattccacttgaaagtaaagtatcatccataaagaattctttactccaataacttgttttatag |
23219785 |
T |
|
| Q |
102 |
aagaattcatgcaccaaaatacattttatttctaaaattaat--tattaacataacatgtgaaaaataagatggattaatatcaacgacatcaatgctta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
23219784 |
aagaattcatgcaccaaaatacattttatttctagacttaattatattaacgtaacatgtgaaaaataagatgagttaatatcaa------caatgctta |
23219691 |
T |
|
| Q |
200 |
gttaagtattaacattagcagatgaattctttcaacaaaaa |
240 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||| |
|
|
| T |
23219690 |
gttaaatattaacattagcagatggattctttcaaaaaaaa |
23219650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 22644795 - 22644844
Alignment:
| Q |
2 |
aagtgtcaatatgacatttatatgtaaagaaaagacaattccacttggaa |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22644795 |
aagtgtcaatatgacatttatatgtaaagaacagacaattccacttggaa |
22644844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 27031658 - 27031609
Alignment:
| Q |
2 |
aagtgtcaatatgacatttatatgtaaagaaaagacaattccacttggaa |
51 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
27031658 |
aagtgtcaatatgacaattatatataaagaacagacaattccacttggaa |
27031609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University