View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19887_low_2 (Length: 406)

Name: NF19887_low_2
Description: NF19887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19887_low_2
NF19887_low_2
[»] chr5 (1 HSPs)
chr5 (18-392)||(36199276-36199650)
[»] chr7 (2 HSPs)
chr7 (123-383)||(28449405-28449665)
chr7 (220-275)||(12635951-12636006)
[»] chr1 (2 HSPs)
chr1 (128-387)||(48675085-48675344)
chr1 (215-288)||(41662527-41662600)
[»] chr2 (6 HSPs)
chr2 (223-326)||(410494-410600)
chr2 (216-271)||(996740-996795)
chr2 (188-274)||(821405-821491)
chr2 (214-274)||(973725-973785)
chr2 (220-274)||(1403805-1403859)
chr2 (99-156)||(821523-821579)
[»] chr3 (3 HSPs)
chr3 (224-270)||(43360019-43360065)
chr3 (220-274)||(45810203-45810257)
chr3 (105-152)||(45810090-45810135)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 36199650 - 36199276
Alignment:
Q  18 acattgtgtatgatattcatagctcaaaccatcaaattcaacaattttatggtagaatcttacgaaacaacggacatgaaagaaaactactacttacata 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36199650 acattgtctatgatattcatagctcaaaccatcaaattcaacaattttatggtagaaacttacgaaacaacggacatgaaagaaaactactacttacata 36199551  T
Q  118 tatcttatatgttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactcc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36199550 tatcttatatgttatcaataaactgaaagttgacaagtttttgatgccattggaattaaggatagttccttttctatttgaggttgttctttgtcactcc 36199451  T
Q  218 atattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36199450 atattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcccgaatagtgca 36199351  T
Q  318 agttctaagatataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttttcctccttc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36199350 agttctaagatataatgaaagaaattgtggagtggattttggatccacccaattttcttgttcttttcctccttc 36199276  T

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Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 123 - 383
Target Start/End: Original strand, 28449405 - 28449665
Alignment:
Q  123 tatatgttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatatt 222  Q
    |||| ||||||||||||||||||||||||||||| | |||||| |||||  | |||||| |||| |||||||||||||||||||||| |||||||||||     
T  28449405 tatacgttatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatc 28449504  T
Q  223 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttc 322  Q
     |||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||| | ||||||||||||||| || |||||| ||||||||||||||     
T  28449505 atcatggtttgtaaaactcttgcattattaagaatatatcttgctagcataatgtcattttgtaggtctacaaatgcaaagtcccgaatagtgcaagttg 28449604  T
Q  323 taagatataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttt 383  Q
    |||||| |||||| ||  |||||||||  ||| |||| |  |||||||||| |||| ||||    
T  28449605 taagatgtaatgagaggcattgtggagcagatgttgggtttacccaactttgttgtccttt 28449665  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 12636006 - 12635951
Alignment:
Q  220 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataag 275  Q
    |||||||| |||||||||||||||||||| || | |||||| ||||||| ||||||    
T  12636006 attgtcatggtttgtaaaactcttgcattcttcaaaatataccttgctagcataag 12635951  T

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Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 128 - 387
Target Start/End: Original strand, 48675085 - 48675344
Alignment:
Q  128 gttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcat 227  Q
    ||||||||||||||||||||||||| |||   || ||| |||||  | |||||| |||| |||||||||||||||| || ||||| ||||||||||||||    
T  48675085 gttatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcat 48675184  T
Q  228 agtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaagttctaaga 327  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |  || ||||||||   ||| |  |||||| |||||||||| |||||||||    
T  48675185 agtttgtaaaacttttgcattatttagaatatatcttgctaacataatattatgctgtaggtcactaaaggtaaagtcccgaatagtgcaggttctaaga 48675284  T
Q  328 tataatgaaagaaattgtggagtggattttggatccacccaactttcttgttcttttcct 387  Q
     |||||  |||  ||||||||| | | || || |||||||||||||||||||||| ||||    
T  48675285 gataattgaaggcattgtggagggaacttagggtccacccaactttcttgttcttgtcct 48675344  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 41662527 - 41662600
Alignment:
Q  215 tccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggtcgtgttgtagg 288  Q
    |||| ||| |||| |||||||||||||||||||| || | || ||| ||||||| |||||| |||| |||||||    
T  41662527 tccagattttcatggtttgtaaaactcttgcattcttcaaaacataccttgctagcataagctcgtcttgtagg 41662600  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 410600 - 410494
Alignment:
Q  223 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggt---cgtgttgtaggtctacaaaagcgaagtcctgaatagtgcaag 319  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||||||| ||     ||||||||| || |||| ||||||||| ||||||||||||    
T  410600 gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaag 410501  T
Q  320 ttctaag 326  Q
    || ||||    
T  410500 ttgtaag 410494  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 996740 - 996795
Alignment:
Q  216 ccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaaca 271  Q
    ||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  996740 ccatattttcatggtttgtaaaagtcttgcattctttagaatatatcttgctaaca 996795  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 821491 - 821405
Alignment:
Q  188 tttctatttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 274  Q
    ||||||||| || |||||  ||||  ||||| ||||||||||||| ||||||||| ||||| || |||||| || ||||||||||||    
T  821491 tttctatttcagattgtttattgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataa 821405  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 973725 - 973785
Alignment:
Q  214 ctccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 274  Q
    ||||| ||| |||||||||||||||||||||| || |  |||||| |||||||||||||||    
T  973725 ctccagattttcatagtttgtaaaactcttgcgttctccagaataaatcttgctaacataa 973785  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 1403859 - 1403805
Alignment:
Q  220 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 274  Q
    |||| |||||||| |||||||||||||||||  |||||| | |||||||||||||    
T  1403859 attgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataa 1403805  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 821579 - 821523
Alignment:
Q  99 gaaaactactacttacatatatcttatatgttatcaataaactgaaagttgacaagtt 156  Q
    ||||| || |||||||||| ||| ||||||||||||||||| |||||||||||| |||    
T  821579 gaaaaataatacttacata-atcgtatatgttatcaataaaatgaaagttgacatgtt 821523  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 43360065 - 43360019
Alignment:
Q  224 tcatagtttgtaaaactcttgcattatttagaatatatcttgctaac 270  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||||||||    
T  43360065 tcatagtttgcaaaactcttgcattattaagaatgtatgttgctaac 43360019  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 45810203 - 45810257
Alignment:
Q  220 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 274  Q
    ||||||||||||| ||||||| ||||||| || |||||| | |||||||||||||    
T  45810203 attgtcatagtttctaaaacttttgcattcttcagaataaaccttgctaacataa 45810257  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 45810090 - 45810135
Alignment:
Q  105 tactacttacatatatcttatatgttatcaataaactgaaagttgaca 152  Q
    ||||||||||||||  | ||||||||||||||||| ||||||||||||    
T  45810090 tactacttacatat--catatatgttatcaataaattgaaagttgaca 45810135  T

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