View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19887_low_3 (Length: 369)
Name: NF19887_low_3
Description: NF19887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19887_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 2041770 - 2042110
Alignment:
| Q |
13 |
tgaaatgattttgtttggatacattcaaaataaaaatgatatatttgaaaaatgtttggatattttgtgtaagaattgatgttggactgcaaacgccaaa |
112 |
Q |
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| T |
2041770 |
tgaaatgattttgtttggatacattcaaaataagaatgatatatttgaaaaatgtttggatattttgtgtaagaattgatgttggactgcaaacgccaaa |
2041869 |
T |
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| Q |
113 |
ccaaacatcgacaaaatagcatatagcaaaacgatagcaacctgttcaaatttcgttacgctgtagtgctgtttaacaaaattaggctctagatagtttt |
212 |
Q |
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| T |
2041870 |
ccaaacattgacaaaatagcatatagcaaaacgatagcaacctgttcaaatttcgttacgctgtagtgctgtttaacaaaattaggctctagatagtttt |
2041969 |
T |
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| Q |
213 |
ataaaattgctttaggctctagatagttctataaaattgcttttgtacttgcattctatggttgaaatttgttattttacatgtttatttttaagaaata |
312 |
Q |
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| T |
2041970 |
ataaaattgctttaggctctagatagttttataaaattccttttgtacttgcattctatggttgaaatttgttattttacatgtttatttttaagaaata |
2042069 |
T |
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| Q |
313 |
tttctcaaggtgatcctgttcatttggtttcagtgcattaa |
353 |
Q |
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| T |
2042070 |
tttctcaaggtgatcctgttcatttggtttcagtgcattaa |
2042110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 2045132 - 2045164
Alignment:
| Q |
239 |
ttctataaaattgcttttgtacttgcattctat |
271 |
Q |
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| T |
2045132 |
ttctacaaaattgcttttgtacttgcattctat |
2045164 |
T |
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