View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19888_high_1 (Length: 354)
Name: NF19888_high_1
Description: NF19888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19888_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 10252169 - 10251847
Alignment:
| Q |
8 |
tagcataggggggtgcatatgtgtggtgaaaatgaagcataaaactaaatcatgatatttctctttggaattcattaatgcgcaaagggtccacctttct |
107 |
Q |
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| T |
10252169 |
tagcatagaggggtacatctgtgtggtgaaaatgaagcataaaactaaatcatgatatttctctttggaatccattaatgcgcaaagggtccacctttct |
10252070 |
T |
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| Q |
108 |
tttagccactcaaaggagtaggtgcctctatcaattttcttaaccacatattgcccgatttcaattttgtttgaggtacataagacaacaatttatccac |
207 |
Q |
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| T |
10252069 |
tttagccactcaaaggagtaggtgcctctatcaattttctgaaccacatattgcccgatttcaattttgtttgaggtacataagacaacaatttatccac |
10251970 |
T |
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| Q |
208 |
aatgtatggaattaatatacaaagtattttcttttggataaataaaaaccaattggaactacaaaatatcagtgagttatattatgcattcctgtgtcca |
307 |
Q |
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| T |
10251969 |
a----atggaattaatatacaaagtattttcttttggataaataaaaaccaattggaactacaaaatatcagtgagttatattatgcattcctgtgtcca |
10251874 |
T |
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| Q |
308 |
tgtcaaataaaacagtttcttaatttc |
334 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
10251873 |
tgtcaaacaaaacagtttcttaatttc |
10251847 |
T |
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