View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19888_low_3 (Length: 249)

Name: NF19888_low_3
Description: NF19888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19888_low_3
NF19888_low_3
[»] chr8 (3 HSPs)
chr8 (2-159)||(3879468-3879625)
chr8 (35-154)||(531635-531754)
chr8 (35-154)||(30945459-30945576)
[»] chr3 (9 HSPs)
chr3 (2-159)||(36950159-36950316)
chr3 (1-159)||(53282211-53282369)
chr3 (1-154)||(29703542-29703695)
chr3 (1-151)||(20104240-20104389)
chr3 (1-153)||(5232864-5233015)
chr3 (35-154)||(39833237-39833356)
chr3 (92-154)||(31658826-31658888)
chr3 (84-154)||(50650398-50650468)
chr3 (84-154)||(12938542-12938612)
[»] chr2 (9 HSPs)
chr2 (2-159)||(7089143-7089300)
chr2 (2-159)||(33755071-33755228)
chr2 (1-153)||(37078865-37079016)
chr2 (35-154)||(15330686-15330805)
chr2 (35-154)||(17690555-17690674)
chr2 (35-154)||(37261703-37261822)
chr2 (35-154)||(14810121-14810240)
chr2 (79-154)||(16429859-16429934)
chr2 (84-151)||(18977120-18977187)
[»] chr4 (10 HSPs)
chr4 (1-154)||(15531217-15531370)
chr4 (84-154)||(28679508-28679578)
chr4 (31-154)||(45989616-45989728)
chr4 (35-154)||(20133361-20133480)
chr4 (31-154)||(42069052-42069164)
chr4 (31-154)||(47031465-47031577)
chr4 (35-154)||(55919393-55919512)
chr4 (92-154)||(42976479-42976541)
chr4 (84-154)||(27293087-27293157)
chr4 (84-154)||(4919155-4919225)
[»] chr5 (6 HSPs)
chr5 (1-151)||(39884613-39884763)
chr5 (35-154)||(24788330-24788449)
chr5 (84-154)||(1828553-1828623)
chr5 (84-154)||(40314018-40314088)
chr5 (84-154)||(41413449-41413519)
chr5 (98-154)||(30625019-30625075)
[»] chr1 (4 HSPs)
chr1 (35-154)||(12981472-12981591)
chr1 (35-154)||(45348274-45348393)
chr1 (92-154)||(45325641-45325703)
chr1 (95-154)||(27286316-27286375)
[»] chr7 (5 HSPs)
chr7 (52-154)||(45972392-45972493)
chr7 (31-154)||(6442584-6442696)
chr7 (38-153)||(47327896-47328011)
chr7 (31-154)||(34094065-34094177)
chr7 (35-154)||(29243331-29243448)
[»] scaffold0166 (1 HSPs)
scaffold0166 (35-154)||(30713-30832)
[»] chr6 (2 HSPs)
chr6 (84-154)||(28138046-28138116)
chr6 (95-154)||(12938794-12938853)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 3879625 - 3879468
Alignment:
Q  2 agatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaa 101  Q
    |||||||||||||||||||||||  ||  |||||| ||||||  |||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||    
T  3879625 agatttcaagtgatgacacgtcagataccctgcattatgttagtgtgcaggcggtctacagtactgtaagtagaagaaaaactttatttcatgatcttaa 3879526  T
Q  102 tggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgatcagta 159  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  3879525 tggttagatttacttggtctctatgttattgtggtatattgtctacacatgattagta 3879468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 531635 - 531754
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| || || |||||||||| ||||||||| |||||||||||||||    
T  531635 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttatttcataattttaatggttagatttacttgatctctatgttattgt 531733  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  531734 ggtacaccatctacacatgat 531754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 30945576 - 30945459
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  | ||||| ||| |||| |||||||||||||||| ||||||||| ||||||  |||||||    
T  30945576 atcatgttccagtgtagtgcggtctacggtagcgtaagtgaatgaaaacttt-atttcatgatcttaatggttagatttacttgatctcta--ttattgt 30945480  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  30945479 ggtacaccatctacacatgat 30945459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 36950316 - 36950159
Alignment:
Q  2 agatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaa 101  Q
    |||||||||||||||||||||||  ||  |||||| |||||| |||||||||| |||||||||||||||||| ||| |||| ||||||| ||||||||||    
T  36950316 agatttcaagtgatgacacgtcagataccctgcattatgttagagtgcaggcgttctacagtaccgtaagtagaaggaaaactttatttcatgatcttaa 36950217  T
Q  102 tggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgatcagta 159  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  36950216 tggttagatttacttggtctctatgttattgtggtatattgtctacacatgattagta 36950159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 53282211 - 53282369
Alignment:
Q  1 cagatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatctta 100  Q
    ||||||||||||||||||||||||  ||  |||||| ||||||  |||||||||||||||||||||||||||| ||| |||| ||||||| || ||||||    
T  53282211 cagatttcaagtgatgacacgtcagataccctgcattatgttattgtgcaggcggtctacagtaccgtaagtaaaaggaaaactttatttcattatctta 53282310  T
Q  101 atggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgatcagta 159  Q
    ||||||| |||||||| ||||||||||||||||||||||  ||||||||||||| ||||    
T  53282311 atggttagatttacttagtctctatgttattgtggtatactgtctacacatgattagta 53282369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 29703695 - 29703542
Alignment:
Q  1 cagatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatctta 100  Q
    |||||||||||||||||||||||   ||  |||||| |||||| |||||||||||| |||||||||||||||| ||  |||| ||||||| |||||||||    
T  29703695 cagatttcaagtgatgacacgtcggataccctgcattatgttatagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatctta 29703596  T
Q  101 atggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| |||||||| ||||||||||||||||||||||  |||||||||||||    
T  29703595 atggttagatttacttagtctctatgttattgtggtatactgtctacacatgat 29703542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 20104240 - 20104389
Alignment:
Q  1 cagatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatctt 99  Q
    ||||||| ||||||||||||||||   || ||  || ||||||||||| || |||||||||| |||||| |||| |||||||| ||||||| ||||||||    
T  20104240 cagattttaagtgatgacacgtcagaaatccta-ataatgttacagtgtagtgcggtctacaataccgttagta-aagaaaaactttatttcatgatctt 20104337  T
Q  100 aatggttaaatttacttggtctctatgttattgtggtatatcgtctacacat 151  Q
    |||||||| ||||||||| ||| ||||||||||||||| | | |||||||||    
T  20104338 aatggttagatttacttgatctttatgttattgtggtacaacatctacacat 20104389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 5232864 - 5233015
Alignment:
Q  1 cagatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatctt 99  Q
    ||||||| ||||||||||||||||   || ||  || ||||||||||| || |||||||||| ||||||||||  |||||||| ||||||| ||||||||    
T  5232864 cagattttaagtgatgacacgtcagagat-cttaataatgttacagtgtagtgcggtctacaataccgtaagtg-aagaaaaactttatttcatgatctt 5232961  T
Q  100 aatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatga 153  Q
    ||| |||| ||||||||| ||| ||||||||||||||| | | |||||||||||    
T  5232962 aatagttagatttacttgatctttatgttattgtggtacaacatctacacatga 5233015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 39833356 - 39833237
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  39833356 atcatgtttcagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgt 39833258  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  39833257 ggtacaccatctacacatgat 39833237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 31658888 - 31658826
Alignment:
Q  92 atgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| | | ||||||||||||    
T  31658888 atgatcttaacggttagatttacttggtctctatgttattgtggtacaccatctacacatgat 31658826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 50650468 - 50650398
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| | |||||||| ||||| ||||  ||||||||||||||||||||||| | | ||||||||||||    
T  50650468 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgat 50650398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 12938542 - 12938612
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| | |||||||| |||||  |||||||||| ||||||||||||||||| | | | ||||||||||    
T  12938542 tttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgat 12938612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 7089143 - 7089300
Alignment:
Q  2 agatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaa 101  Q
    |||||||||||||||||||||||  ||  |||||| |||||| ||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||    
T  7089143 agatttcaagtgatgacacgtcagataccctgcattatgttagagtgcaggcggtctacagtaccgtaagtagaaggaaaactttatttcatgatcttaa 7089242  T
Q  102 tggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgatcagta 159  Q
    |||||| ||||||||| |||||||||||||||||||||| || |||||||||| ||||    
T  7089243 tggttagatttacttgatctctatgttattgtggtatattgtttacacatgattagta 7089300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 33755228 - 33755071
Alignment:
Q  2 agatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaa 101  Q
    |||||||||||||||||||||||  ||  |||||| |||||| ||||||||||||||| ||||||||||||| |||||||| ||||||| ||||| ||||    
T  33755228 agatttcaagtgatgacacgtcagataccctgcattatgttagagtgcaggcggtctagagtaccgtaagtagaagaaaaactttatttcatgatattaa 33755129  T
Q  102 tggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgatcagta 159  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||||||||| ||||    
T  33755128 tggttagatttacttggtctatatgttattgtggtatattgtctacacatgattagta 33755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 37078865 - 37079016
Alignment:
Q  1 cagatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatctt 99  Q
    ||||||| ||||||||||||||||   || ||  || ||||||||||| || |||||||||| ||||||||||  |||||||| ||||||| ||||||||    
T  37078865 cagattttaagtgatgacacgtcagaaat-cttaataatgttacagtgtagtgcggtctacaataccgtaagtg-aagaaaaactttatttcatgatctt 37078962  T
Q  100 aatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatga 153  Q
    ||| |||| ||||||||| ||| ||||||||||||||| | | |||||||||||    
T  37078963 aatagttagatttacttgatctttatgttattgtggtacaacatctacacatga 37079016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 15330686 - 15330805
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  15330686 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgt 15330784  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  15330785 ggtacaccatctacacatgat 15330805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 17690555 - 17690674
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  17690555 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttattttatgattttaatggttagatttacttgatctctatgttattgt 17690653  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  17690654 ggtacaccatctacacatgat 17690674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 37261822 - 37261703
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  37261822 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgt 37261724  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  37261723 ggtacaccatctacacatgat 37261703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 14810240 - 14810121
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||  ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||| ||| |||||||||||||||    
T  14810240 atcatgttccagtgtagtgcggtctatggtagcgtaagtg-aaggaaaactttatttcatgattttaatggttagatttatttgatctctatgttattgt 14810142  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  14810141 ggtacaccatctacacatgat 14810121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 16429859 - 16429934
Alignment:
Q  79 aaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    |||| ||||||| ||||| |||||||||| ||||||||| ||||||||||||| ||||| | | ||||||||||||    
T  16429859 aaaactttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacatgat 16429934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 18977187 - 18977120
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacat 151  Q
    ||||||| ||||||||||  |||| |||||||| |||||||||||||||||||| | | |||||||||    
T  18977187 tttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacat 18977120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15531370 - 15531217
Alignment:
Q  1 cagatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatctta 100  Q
    ||||||||||||||||| ||||||  ||  |||||| ||||||||||||||||||| |||||||||||||||| ||  |||| ||||||| |||||||||    
T  15531370 cagatttcaagtgatgatacgtcagataccctgcattatgttacagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatctta 15531271  T
Q  101 atggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| |||||||| ||||||||||||||||||||||  |||||||||||||    
T  15531270 atggttagatttacttagtctctatgttattgtggtatactgtctacacatgat 15531217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 28679508 - 28679578
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgat 28679578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 45989728 - 45989616
Alignment:
Q  31 ctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttat 130  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| | |           ||||||||| ||||| ||||| ||||||||||||||||    
T  45989728 ctgcatcatgttacagtgtaggcggtctacagtaccgtaagtagaaggaca-----------tgatcttaacggttagatttaattggtctctatgttat 45989640  T
Q  131 tgtggtatatcgtctacacatgat 154  Q
    ||||||||| | ||||||||||||    
T  45989639 tgtggtataccatctacacatgat 45989616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 20133361 - 20133480
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  20133361 atcatgtttcagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgt 20133459  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  20133460 ggtacaccatctacacatgat 20133480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 42069164 - 42069052
Alignment:
Q  31 ctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttat 130  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| | |           ||||||||| ||||| ||||| ||| ||||||||||||    
T  42069164 ctgcatcatgttacagtgtaggcggtctacagtaccgtaagtagaaggaca-----------tgatcttaacggttagatttaattgatctctatgttat 42069076  T
Q  131 tgtggtatatcgtctacacatgat 154  Q
    ||||||||| | ||||||||||||    
T  42069075 tgtggtataccatctacacatgat 42069052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 47031577 - 47031465
Alignment:
Q  31 ctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttat 130  Q
    |||||| ||||||||||| |||||||||||||||||||||||| ||| | |           ||||||||||||||| ||||| ||| ||||||||||||    
T  47031577 ctgcattatgttacagtgtaggcggtctacagtaccgtaagtagaaggaca-----------tgatcttaatggttagatttaattgatctctatgttat 47031489  T
Q  131 tgtggtatatcgtctacacatgat 154  Q
    ||||||||| | ||||||||||||    
T  47031488 tgtggtataccatctacacatgat 47031465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 55919512 - 55919393
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| ||||| ||||| |||| ||||||||| |||||||||||||||    
T  55919512 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttatttcatgattttaatagttagatttacttgatctctatgttattgt 55919414  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  55919413 ggtacaccatctacacatgat 55919393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 42976479 - 42976541
Alignment:
Q  92 atgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||| | | ||||||||||||    
T  42976479 atgatcttaacggttagatttacttggtctctatgttaatgtggtacaccatctacacatgat 42976541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 27293087 - 27293157
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| | |||||||| ||||| ||||  ||||||||||||||||||||||| | | ||||||||||||    
T  27293087 tttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgat 27293157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 4919155 - 4919225
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| | |||||||||||||| ||||  |||||||||||| |||||||||| |   ||||||||||||    
T  4919155 tttatttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgctctacacatgat 4919225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 39884613 - 39884763
Alignment:
Q  1 cagatttcaagtgatgacacgtcaattattctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatctta 100  Q
    ||||||||||||||||||||||||  ||   ||||| ||||||||||||||||||| |||||||||||||||| ||  |||| ||||||| |||||||||    
T  39884613 cagatttcaagtgatgacacgtcagataccatgcattatgttacagtgcaggcggtttacagtaccgtaagtagaatgaaaactttatttcatgatctta 39884712  T
Q  101 atggttaaatttacttggtctctatgttattgtggtatatcgtctacacat 151  Q
    ||||||| |||||||| ||||||||||||||||||||||  ||||||||||    
T  39884713 atggttagatttacttagtctctatgttattgtggtatactgtctacacat 39884763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 24788449 - 24788330
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||  ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  24788449 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaagctttattttatgattttaatggttagatttacttgatctctatgttattgt 24788351  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  24788350 ggtacaccatctacacatgat 24788330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 1828553 - 1828623
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| | |||||||| |||||  |||||||||| ||||||||||||||||| | | | ||||||||||    
T  1828553 tttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgat 1828623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 40314018 - 40314088
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| | |||||||| |||||  |||||||||| ||||||||||||||||| | | | ||||||||||    
T  40314018 tttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgat 40314088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 41413519 - 41413449
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| | |||||||| |||||  |||||||||| ||||||||||||||||| | | | ||||||||||    
T  41413519 tttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgat 41413449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 30625019 - 30625075
Alignment:
Q  98 ttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    |||| ||||| ||||  ||||||||||||||||||||||| | | ||||||||||||    
T  30625019 ttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgat 30625075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 12981472 - 12981591
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  12981472 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgt 12981570  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  12981571 ggtacaccatctacacatgat 12981591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 45348393 - 45348274
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  45348393 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgt 45348295  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  45348294 ggtacaccatctacacatgat 45348274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 45325703 - 45325641
Alignment:
Q  92 atgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    |||||||||| ||||| ||||| || |||||||||||||||||||||| | ||||||||||||    
T  45325703 atgatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgat 45325641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 27286316 - 27286375
Alignment:
Q  95 atcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||| | | ||||||||||||    
T  27286316 atcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgat 27286375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 45972392 - 45972493
Alignment:
Q  52 gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacat 151  Q
    ||||||||| ||| |||||||  ||| |||| ||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||| | | |||||||||    
T  45972392 gcggtctacggtagcgtaagtg-aaggaaaactttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacat 45972490  T
Q  152 gat 154  Q
    |||    
T  45972491 gat 45972493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 6442584 - 6442696
Alignment:
Q  31 ctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttat 130  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| |            ||||||||||  |||| ||||| ||||||||||||||||    
T  6442584 ctgcatcatgttacagtgtaggcggtctacagtaccgtaagtagaagga-----------catgatcttaactgttagatttaattggtctctatgttat 6442672  T
Q  131 tgtggtatatcgtctacacatgat 154  Q
    ||||||||| | ||||||||||||    
T  6442673 tgtggtataccatctacacatgat 6442696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 47327896 - 47328011
Alignment:
Q  38 atgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggt 136  Q
    ||||||||||| || || ||||||| ||| ||||||  |||||||| ||||||| ||||||||||| |||| ||||||||| ||| ||||||||||||||    
T  47327896 atgttacagtgtagtgcagtctacaatactgtaagtg-aagaaaaactttatttcatgatcttaatagttagatttacttgatctttatgttattgtggt 47327994  T
Q  137 atatcgtctacacatga 153  Q
    | | | |||||||||||    
T  47327995 acaacatctacacatga 47328011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 34094065 - 34094177
Alignment:
Q  31 ctgcatcatgttacagtgcaggcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttat 130  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||| |            || ||||||| ||||| ||||| ||| ||||||||||||    
T  34094065 ctgcatcatgttacagtgtaggcggtctacagtaccgtaagtagaagga-----------cataatcttaacggttagatttaattgatctctatgttat 34094153  T
Q  131 tgtggtatatcgtctacacatgat 154  Q
    ||||||||| | ||||||||||||    
T  34094154 tgtggtataccatctacacatgat 34094177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 29243331 - 29243448
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  | ||||| ||| |||| |||||||||||||||| ||||||||| ||||||  |||||||    
T  29243331 atcatgttccagtgtagtgcggtctacggtagcgtaagtgaatgaaaacttt-atttcatgatcttaatggttagatttacttgatctcta--ttattgt 29243427  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  29243428 ggtacaccatctacacatgat 29243448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 30832 - 30713
Alignment:
Q  35 atcatgttacagtgcag-gcggtctacagtaccgtaagtataagaaaaattttatttgatgatcttaatggttaaatttacttggtctctatgttattgt 133  Q
    |||||||| ||||| || ||||||||| ||| |||||||  ||| |||  ||||||| ||||| |||||||||| ||||||||| |||||||||||||||    
T  30832 atcatgttccagtgtagtgcggtctacggtagcgtaagtg-aaggaaagctttattttatgattttaatggttagatttacttgatctctatgttattgt 30734  T
Q  134 ggtatatcgtctacacatgat 154  Q
    |||| | | ||||||||||||    
T  30733 ggtacaccatctacacatgat 30713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 28138116 - 28138046
Alignment:
Q  84 tttatttgatgatcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||  || ||||||||||||    
T  28138116 tttatttcatgatcttaaaggttagatttacttggtctctatattattgtggtacgtcatctacacatgat 28138046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 12938794 - 12938853
Alignment:
Q  95 atcttaatggttaaatttacttggtctctatgttattgtggtatatcgtctacacatgat 154  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||| | | ||||||||||||    
T  12938794 atcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgat 12938853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University