View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19889_high_1 (Length: 689)

Name: NF19889_high_1
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19889_high_1
NF19889_high_1
[»] chr8 (3 HSPs)
chr8 (82-675)||(15796387-15796984)
chr8 (538-629)||(40634186-40634276)
chr8 (542-629)||(10623958-10624044)
[»] chr3 (2 HSPs)
chr3 (541-629)||(20175900-20175987)
chr3 (538-629)||(29517801-29517891)
[»] chr2 (1 HSPs)
chr2 (541-629)||(5596512-5596599)
[»] chr6 (1 HSPs)
chr6 (541-631)||(13704713-13704804)
[»] chr7 (1 HSPs)
chr7 (541-629)||(45804173-45804260)
[»] chr1 (1 HSPs)
chr1 (541-629)||(31771618-31771706)


Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 82 - 675
Target Start/End: Original strand, 15796387 - 15796984
Alignment:
Q  82 gtgtttgagaatactatacaaccattgtttttgtaaagagaaataaacaaatcacgtggattggtaaattcagcagacaaagtcatgcaaagatttcgtg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15796387 gtgtttgagaatactatacaaccattgtttttgtaaagagaaataaacaaaccacgtggattggtaaattcagcagataaagtcatgcaaagatttcgtg 15796486  T
Q  182 tcaagcttcttctccttaacttgtccaaccgggtaaataaaattagctgttaaattacaaactttggaaattataaccattcactttgacttccttcnnn 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       
T  15796487 tcaagcttcttctccttaacttgtccaaccgggtaaataaaattagctgttaaattacaaactttggaaattataaccattcaatttgacttccttcaaa 15796586  T
Q  282 nnnnnnnnn-cattcactttaagtaac----tattttgcattaaactctgaatcctatttgcctgattaaaacgacgcctttttatctttctttggacgg 376  Q
              |||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15796587 aaaaaataaacattcactttaactaactaactattttgcattaaactctgaatcctatttgcctgattaaaacgacgccgttttatctttctttggacgg 15796686  T
Q  377 aaacatgcaaccaaggttctctgcatcatcataaggtcgtgctttatcattgaagtgcattaaaagaatgacattgtaagtgttaatttcatataattgt 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15796687 aaacatgcaaccaaggttctctgcatcatcataaggtcgtgctttatcattgaagtgcattaaaagaatgacattgtaagtgttaatttcatataattgt 15796786  T
Q  477 tactacttccctagacataaatcctcttttctgaacnnnnnnntgtctttataagttattaggtctgtttggaacaatttttggctttagttttgaaaat 576  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15796787 tactacttccctagacataaatcctcttttctgaac-aaaaaatgtctttataagttattaggtttgtttggaacaatttttggctttagttttgaaaat 15796885  T
Q  577 atgttttatataaatcaattttagaaaacgtttttaagaagagaaaaagaaaattccgtttgtgataatgtgacttttcaaactgttttaggaaggatc 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15796886 atgttttatataaatcaattttagaaaacgtttttaagaagagaaaaagaaaattccgtttgtgataatgtgacttttcaaactgttttaggaaggatc 15796984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 629
Target Start/End: Original strand, 40634186 - 40634276
Alignment:
Q  538 ggtctgtttggaacaatttttggctttagttttgaaaatatgttttatataaatcaattttagaaaa-cgtttttaagaagagaaaaagaaaa 629  Q
    ||||||||||||||| ||||||  |||| |||| |||||||||||  || |||||||||||||||||  | ||| ||||||||||||||||||    
T  40634186 ggtctgtttggaacactttttgtttttaatttttaaaatatgttt--taaaaatcaattttagaaaagtgatttcaagaagagaaaaagaaaa 40634276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 629
Target Start/End: Original strand, 10623958 - 10624044
Alignment:
Q  542 tgtttggaacaatttttggctttagttttgaaaatatgttttatataaatcaattttagaaaa-cgtttttaagaagagaaaaagaaaa 629  Q
    ||||||||||| ||||||  ||||||||| |||||||||||  || |||  ||||||||||||  | |||||||||||| |||||||||    
T  10623958 tgtttggaacactttttgtttttagttttcaaaatatgttt--taaaaactaattttagaaaagggattttaagaagagtaaaagaaaa 10624044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 629
Target Start/End: Original strand, 20175900 - 20175987
Alignment:
Q  541 ctgtttggaacaatttttggctttagttttgaaaatatgttttatataaatcaattttagaaaa-cgtttttaagaagagaaaaagaaaa 629  Q
    |||||||||||| ||||||  ||||||||| |||||||||||  || |||||||||||||||||  | ||| ||||||||||||||||||    
T  20175900 ctgtttggaacactttttgtttttagttttcaaaatatgttt--taaaaatcaattttagaaaagtgatttcaagaagagaaaaagaaaa 20175987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 629
Target Start/End: Original strand, 29517801 - 29517891
Alignment:
Q  538 ggtctgtttggaacaatttttggctttagttttgaaaatatgttttatataaatcaattttagaaaa-cgtttttaagaagagaaaaagaaaa 629  Q
    ||||||||||||||  ||||||  ||||||||| ||||||| |||  || |||||||||||||||||  | ||| ||||||||||||||||||    
T  29517801 ggtctgtttggaacggtttttgtttttagtttttaaaatatattt--taaaaatcaattttagaaaagtgatttcaagaagagaaaaagaaaa 29517891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 629
Target Start/End: Original strand, 5596512 - 5596599
Alignment:
Q  541 ctgtttggaacaatttttggctttagttttgaaaatatgttttatataaatcaattttagaaaa-cgtttttaagaagagaaaaagaaaa 629  Q
    |||||||||||| ||||||  | ||||||| |||||||||||  || |||||||||||||||||  | ||| ||||||||||||||||||    
T  5596512 ctgtttggaacactttttgtttctagttttcaaaatatgttt--taaaaatcaattttagaaaagtgatttcaagaagagaaaaagaaaa 5596599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 631
Target Start/End: Original strand, 13704713 - 13704804
Alignment:
Q  541 ctgtttggaacaatttttggctttagttttgaaaatatgttttatataaatcaattttagaaaac-gtttttaaga--agagaaaaagaaaatt 631  Q
    ||||||||| || ||||||  ||||||||| |||||||||||  ||||||||  ||||||||||| ||||| ||||  ||||||||||||||||    
T  13704713 ctgtttggatcagtttttgtttttagtttttaaaatatgttt--tataaatctgttttagaaaacagttttaaagaagagagaaaaagaaaatt 13704804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 629
Target Start/End: Original strand, 45804173 - 45804260
Alignment:
Q  541 ctgtttggaacaatttttggctttagttttgaaaatatgttttatataaatcaattttagaaaa-cgtttttaagaagagaaaaagaaaa 629  Q
    ||||||| |||| ||||||  ||||||||| |||||||||||  || |||||||||||||||||  | |||||| ||||||||| |||||    
T  45804173 ctgtttgaaacactttttgtttttagtttttaaaatatgttt--taaaaatcaattttagaaaagtgattttaataagagaaaaggaaaa 45804260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 629
Target Start/End: Original strand, 31771618 - 31771706
Alignment:
Q  541 ctgtttggaacaatttttggctttagttttgaaaatatgttttatataaatcaattttagaaaa-cgtttttaagaagagaaaaagaaaa 629  Q
    |||||||||||| ||||||  ||||||||| ||||| |||||| || |||  ||||||||||||  | ||| ||||||||||||||||||    
T  31771618 ctgtttggaacactttttgtttttagttttcaaaatgtgtttt-taaaaactaattttagaaaagggatttcaagaagagaaaaagaaaa 31771706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University