View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_high_12 (Length: 320)
Name: NF19889_high_12
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 30769664 - 30769982
Alignment:
| Q |
1 |
ttaatgaaacaatgaacgacgattccttccctaatgtccccggaggcaagcttcggctcatgtgcagctacggaggccacataatgccgcgccctcacga |
100 |
Q |
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| T |
30769664 |
ttaatgaaacaatgaacgacgattccttccctaatgtccccggaggcaagcttcggctaatgtgcagctacggaggccacataatgccgcgccctcatga |
30769763 |
T |
|
| Q |
101 |
taagtctttatgttatgtaggcggtgacaccagaatcgtggtcgtggatcgcagttcttctctgagagacctatgttcacgcctttcgagaacaattctc |
200 |
Q |
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| T |
30769764 |
taagtctctatgttatgtaggtggtgacaccagaatcgtggtcgtggatcgcagttcttctctgagagacctatgttcgcgtctttcgagaacaattctc |
30769863 |
T |
|
| Q |
201 |
aatggaagaccctttactctcaagtaccagcttcctaatgaagaccttgataacctcattacagtaacatcagatgaagatcttgataacatgattgaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30769864 |
aatggaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcattacagtaacatcagatgaagatcttgataacatgattgaag |
30769963 |
T |
|
| Q |
301 |
aatatgatcgtatagcatc |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
30769964 |
aatatgatcgtatagcatc |
30769982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 44884434 - 44884380
Alignment:
| Q |
205 |
gaagaccctttactctcaagtaccagcttcctaatgaagaccttgataacctcat |
259 |
Q |
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||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
44884434 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
44884380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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