View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_high_2 (Length: 602)
Name: NF19889_high_2
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 47 - 584
Target Start/End: Original strand, 9750097 - 9750633
Alignment:
| Q |
47 |
aaagtagatgatgcatttttccgtacccttcaagagagaaataagccatgaataaatagataatgtatgagctagcattctagtaaccacagactttggc |
146 |
Q |
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| T |
9750097 |
aaagtagatgatgcatttt-ccatgcccttcaagagagaaataagccatgaataaatagataatgtatgagctagcattctagtaaccacagactttggc |
9750195 |
T |
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| Q |
147 |
acttgtactcttcctgcaattgaaagcaatgatgccttccaagctgatagtttctctactattggttgaagatggcaagcttttggtcttcctttaaaaa |
246 |
Q |
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| T |
9750196 |
acttgtactcttcctgcaattgaaagcaatgatgccttccaagccgatagttactctgctattggttgaacatggcaagcttttggtattcctttaaaaa |
9750295 |
T |
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| Q |
247 |
ttggctcccctaattagttaagtggtaaagagtcaatatagaatcctagtaagttgatgatattttcgagtcttgttggtgagattcctcctgcataaat |
346 |
Q |
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| T |
9750296 |
ttggctcccccaaatagttaagtggtaaagagtcaatatagaatcctagtaagttgatgatattttggagtcttgttggtgagattcctcctgcataaat |
9750395 |
T |
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| Q |
347 |
agttgacttcctgttatttatcacttaaccaacactgttagcatactttgtaaataaatctcacaaagcttctaggctctcaaagttccccttgaaataa |
446 |
Q |
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| T |
9750396 |
agttgacttcatgctatttatcacttaaccaacactattagcatactttgtaaataaatctcacaaagcttctaggctctcaaagttccccttgaaataa |
9750495 |
T |
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| Q |
447 |
tgggatggaacttggctgtttttagatcctgtaatttgcttcacctttccatcatccaccaactttgttatccctatgctaagagcttcttctgccaaac |
546 |
Q |
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| T |
9750496 |
tgggatggaaattggctgtttttagatcctgtaatttgcttcacctttccatcatccaccaactttgttatccctatgctaagagcttcttctgccaaac |
9750595 |
T |
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| Q |
547 |
aacgaaaaagggatccaaggggtctctcttcctgatac |
584 |
Q |
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| T |
9750596 |
aaagaaaaagggatccaaggggtctctctgcctgatac |
9750633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 294 - 408
Target Start/End: Original strand, 3564226 - 3564340
Alignment:
| Q |
294 |
agtaagttgatgatattttcgagtcttgttggtgagattcctcctgcataaatagttgacttcctgttatttatcacttaaccaacactgttagcatact |
393 |
Q |
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|||| ||||||||| |||| |||||| |||||||||||||| || | |||||| ||||| |||||| ||||||||| || | |||| |||||||||| |
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| T |
3564226 |
agtaggttgatgatgttttggagtctagttggtgagattccaccagaataaattgttgatttcctgcagcttatcacttgactagcactattagcatact |
3564325 |
T |
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| Q |
394 |
ttgtaaataaatctc |
408 |
Q |
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| T |
3564326 |
ttgtaaacaaatctc |
3564340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 3564031 - 3564115
Alignment:
| Q |
111 |
gtatgagctagcattctagtaaccacagactttggcacttgtactcttcctgcaattgaaagcaatgatgccttccaagctgata |
195 |
Q |
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| T |
3564031 |
gtatgagtcagcatgctagtaacaactgactttacaagttgtactcttcctgcaattgacaataatgatgctttccaggctgata |
3564115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 16920572 - 16920609
Alignment:
| Q |
153 |
actcttcctgcaattgaaagcaatgatgccttccaagc |
190 |
Q |
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| T |
16920572 |
actcttcctgcaatagaaagcaatgatgctttccaagc |
16920609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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