View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19889_high_9 (Length: 397)
Name: NF19889_high_9
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_high_9 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 70 - 385
Target Start/End: Complemental strand, 33063658 - 33063343
Alignment:
| Q |
70 |
gttttgcttgagcttgatttcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgca |
169 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33063658 |
gttttgattgaacttgatttcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaatggagatgcg |
33063559 |
T |
|
| Q |
170 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33063558 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
33063459 |
T |
|
| Q |
270 |
agttatggctcatgaatgaaaatagaagttcatctttcttatctgaatttgtgattgaaattgttgttccaacttccagtaataagcctactgatctagg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
33063458 |
agttatggctcatgaatgaaaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttccaacttccggtaataagcctactgatctagg |
33063359 |
T |
|
| Q |
370 |
aaatgggtttgcgttc |
385 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33063358 |
aaatgggtttgcgttc |
33063343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 70 - 385
Target Start/End: Complemental strand, 33065839 - 33065524
Alignment:
| Q |
70 |
gttttgcttgagcttgatttcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgca |
169 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33065839 |
gttttgattgaacttgatttcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaatggagatgcg |
33065740 |
T |
|
| Q |
170 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33065739 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
33065640 |
T |
|
| Q |
270 |
agttatggctcatgaatgaaaatagaagttcatctttcttatctgaatttgtgattgaaattgttgttccaacttccagtaataagcctactgatctagg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
33065639 |
agttatggctcatgaatgaaaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttccaacttccggtaataagcctactgatctagg |
33065540 |
T |
|
| Q |
370 |
aaatgggtttgcgttc |
385 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33065539 |
aaatgggtttgcgttc |
33065524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 70 - 385
Target Start/End: Complemental strand, 33064752 - 33064438
Alignment:
| Q |
70 |
gttttgcttgagcttgatttcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgca |
169 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33064752 |
gttttggttgaacttgatttcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcg |
33064653 |
T |
|
| Q |
170 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33064652 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
33064553 |
T |
|
| Q |
270 |
agttatggctcatgaatgaaaatagaagttcatctttcttatctgaatttgtgattgaaattgttgttccaacttccagtaataagcctactgatctagg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
33064552 |
agttatggctcatgaatgaaaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttccaac-tccggtaataagcctactgatctagg |
33064454 |
T |
|
| Q |
370 |
aaatgggtttgcgttc |
385 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33064453 |
aaatgggtttgcgttc |
33064438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 70 - 385
Target Start/End: Complemental strand, 33066912 - 33066598
Alignment:
| Q |
70 |
gttttgcttgagcttgatttcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgca |
169 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33066912 |
gttttggttgaacttgatttcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcg |
33066813 |
T |
|
| Q |
170 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33066812 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
33066713 |
T |
|
| Q |
270 |
agttatggctcatgaatgaaaatagaagttcatctttcttatctgaatttgtgattgaaattgttgttccaacttccagtaataagcctactgatctagg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
33066712 |
agttatggctcatgaatgaaaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttccaac-tccggtaataagcctactgatctagg |
33066614 |
T |
|
| Q |
370 |
aaatgggtttgcgttc |
385 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33066613 |
aaatgggtttgcgttc |
33066598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 70 - 385
Target Start/End: Complemental strand, 33067998 - 33067684
Alignment:
| Q |
70 |
gttttgcttgagcttgatttcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgca |
169 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33067998 |
gttttggttgaacttgatttcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcg |
33067899 |
T |
|
| Q |
170 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33067898 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
33067799 |
T |
|
| Q |
270 |
agttatggctcatgaatgaaaatagaagttcatctttcttatctgaatttgtgattgaaattgttgttccaacttccagtaataagcctactgatctagg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
33067798 |
agttatggctcatgaatgaaaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttccaac-tccggtaataagcctactgatctagg |
33067700 |
T |
|
| Q |
370 |
aaatgggtttgcgttc |
385 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33067699 |
aaatgggtttgcgttc |
33067684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 70 - 385
Target Start/End: Complemental strand, 33069050 - 33068736
Alignment:
| Q |
70 |
gttttgcttgagcttgatttcagttacggtaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgca |
169 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33069050 |
gttttggttgaacttgatttcagttacggaaggaaattttgacattgattttcctcaattggagtttggcgagagaaaggttgatttgaaaggagatgcg |
33068951 |
T |
|
| Q |
170 |
atgtttgtgcataacaacccagttgagctggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
269 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33068950 |
atgtttgtgcataacaacccagttgagttggtttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttaca |
33068851 |
T |
|
| Q |
270 |
agttatggctcatgaatgaaaatagaagttcatctttcttatctgaatttgtgattgaaattgttgttccaacttccagtaataagcctactgatctagg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
33068850 |
agttatggctcatgaatgaaaatagaagtttatctttcttatctgaatttgtgattgaaattgttgttccaac-tccggtaataagcctactgatctagg |
33068752 |
T |
|
| Q |
370 |
aaatgggtttgcgttc |
385 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33068751 |
aaatgggtttgcgttc |
33068736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 202 - 385
Target Start/End: Complemental strand, 33070005 - 33069822
Alignment:
| Q |
202 |
ttgtcatggtagacatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatgaaaatagaagttca |
301 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33070005 |
ttgttatggtagatatgatgccaaggtgaaagccagctatggaggtatactttacaatactccttacaagttatggctcatgaatgaaaatagaagttta |
33069906 |
T |
|
| Q |
302 |
tctttcttatctgaatttgtgattgaaattgttgttccaacttccagtaataagcctactgatctaggaaatgggtttgcgttc |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33069905 |
tctttcttatctgaatttgtgattgaaattgttgttccaacttccagtaataagcctactgatctaggaaacgggtttgcgttc |
33069822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 33063720 - 33063683
Alignment:
| Q |
18 |
tgtgtgagtgtgtgagcgagggtttggtttgagggaat |
55 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33063720 |
tgtgtgagtgtgtgagtgagtgtttggtttgagggaat |
33063683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 33064814 - 33064777
Alignment:
| Q |
18 |
tgtgtgagtgtgtgagcgagggtttggtttgagggaat |
55 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33064814 |
tgtgtgagtgtgtgagtgagtgtttggtttgagggaat |
33064777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 33065900 - 33065863
Alignment:
| Q |
18 |
tgtgtgagtgtgtgagcgagggtttggtttgagggaat |
55 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33065900 |
tgtgtgagtgtgtgagtgagtgtttggtttgagggaat |
33065863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 33066974 - 33066937
Alignment:
| Q |
18 |
tgtgtgagtgtgtgagcgagggtttggtttgagggaat |
55 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33066974 |
tgtgtgagtgtgtgagtgagtgtttggtttgagggaat |
33066937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 33068060 - 33068023
Alignment:
| Q |
18 |
tgtgtgagtgtgtgagcgagggtttggtttgagggaat |
55 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33068060 |
tgtgtgagtgtgtgagtgagtgtttggtttgagggaat |
33068023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 33069112 - 33069075
Alignment:
| Q |
18 |
tgtgtgagtgtgtgagcgagggtttggtttgagggaat |
55 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33069112 |
tgtgtgagtgtgtgagtgagtgtttggtttgagggaat |
33069075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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