View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_low_13 (Length: 339)
Name: NF19889_low_13
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 14337584 - 14337275
Alignment:
| Q |
18 |
atgtcgatgtctgataactgtcgaacaacaaacaaagcttcaatctgtgtcggctgtgcataggttttgagttgggggagcacatattcgtgtggtcaca |
117 |
Q |
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| T |
14337584 |
atgtcgatgtctgataactgtcgaacaacaaacaaagcttcaatctgtgtcggctgtgcataggttttgagttgggggagcacatattcgtgtggtcaca |
14337485 |
T |
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| Q |
118 |
tacttttgcatttatactggtcttctttaattttgccatctcttgccaaaaaagtttaannnnnnngttgttgcatttgtaccatcatgtggaatatgct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14337484 |
tacttttgcatttatactggtcttctttaattttgccatctcttgtcaaaaaagtttaatttttttgttgttgcatttgtaccatcatgtggaatatgct |
14337385 |
T |
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| Q |
218 |
gtgttgcttaaagtaccaagagtctatggtatatgatgatctatgataaagttagctctctatcctctcttgccaaatctcagccgttggcttactcttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
14337384 |
gtgttgcttaaagtaccaagagtctatggtatatgatgatctatgataaagttagctctctatcctctcttgccaaatcttagccgttggcttaatcttg |
14337285 |
T |
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| Q |
318 |
cttttgggat |
327 |
Q |
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| T |
14337284 |
catttgggat |
14337275 |
T |
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