View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_low_16 (Length: 314)
Name: NF19889_low_16
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 37485259 - 37485544
Alignment:
| Q |
20 |
ccggactcttccacagcttagcaaaagactcttccacttcctcactcaacccatcttccaaaagcaccatatccacaagaactctataggacgagtttat |
119 |
Q |
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| T |
37485259 |
ccggactcttccacagcttaacaaaagactcttccacttcctcactcaacccatcttccaaaagcaccatatccacaagaactctataggacgagtttac |
37485358 |
T |
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| Q |
120 |
cgaaaaaatcccactatcttccggcaaccaccaccacctatccacttcctcccccaaggttatgccctctaacttagccaagcattcaacaattaaattg |
219 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
37485359 |
cgagaaaatcccactatcttccgacaaccaccaccacctatccacttcctcccccaaggttacgccctctaacttagccaagcattccacaattaaattg |
37485458 |
T |
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| Q |
220 |
ttctcccaaaggaaagtacgcctccgccacaaaaagttccaagacacttcatcgttatgcaagacccacaagtcccggacctttgc |
305 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37485459 |
ttctcccaaaggaaagtacgtctccgccacaaaaagttccaagacacttcaccgttatgcaagacccacaagtcccggacctttgc |
37485544 |
T |
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