View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_low_21 (Length: 253)
Name: NF19889_low_21
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_low_21 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 19054422 - 19054661
Alignment:
| Q |
14 |
cataggtgctggagttagtggcatagccgtagcaaaacaactatcacactacaaccctattgtttttgaagccactgattcaattggtggtgtttggaga |
113 |
Q |
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| T |
19054422 |
cataggtgctggagttagtggcttagccgtagcaaaacaactatcacactacaaccctattgtttttgaagccactgattcaattggtggtgtttggaga |
19054521 |
T |
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| Q |
114 |
cattgttcctataggtgtactaagcttcaatcacaaacatggaattatgaatttagtgatttcccttggcctgaaagagaaagtaaagattacccttctc |
213 |
Q |
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| T |
19054522 |
cattgttcctataggtgtactaagcttcaatcacaaacatggaattatgaatttagtgatttcccttggcctgaaagagaaagtaaagattacccttctc |
19054621 |
T |
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| Q |
214 |
atgctgagattttggaatacttgcatctttatgccgttta |
253 |
Q |
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| T |
19054622 |
atgctgagattttggaatacttgcatctttatgccgttta |
19054661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 19192372 - 19192147
Alignment:
| Q |
14 |
cataggtgctggagttagtggcatagccgtagcaaaacaactatcacactacaaccctattgtttttgaagccactgattcaattggtggtgtttggaga |
113 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
19192372 |
cataggtgctggagtgagtggtttagccgtagcaaaacaactatcacactacaaccctattgtttttgaagccactaactccattggtggtgtttggaga |
19192273 |
T |
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| Q |
114 |
cattgttcctataggtgtactaagcttcaatcacaaacatggaattatgaatttagtgatttcccttggcctgaaagagaaagtaaagattacccttctc |
213 |
Q |
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| T |
19192272 |
cattgttcctataggtgtactaaacttcaatcacaaacatggaattatgaatttagtgattttccttggcctaaaagagagagtattgattacccttctc |
19192173 |
T |
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| Q |
214 |
atgctgagattttggaatacttgcat |
239 |
Q |
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| T |
19192172 |
atgctgagattttggaatacttgcat |
19192147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 6898849 - 6898610
Alignment:
| Q |
14 |
cataggtgctggagttagtggcatagccgtagcaaaacaactatcacactacaaccctattgtttttgaagccactgattcaattggtggtgtttggaga |
113 |
Q |
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||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6898849 |
cataggtgctggagtgagtggtttagccgtagtcaaacaactatcacactataacccaattgtttttgaagccactgattcaattgggggtgtttggaga |
6898750 |
T |
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| Q |
114 |
cattgttcctataggtgtactaagcttcaatcacaaacatggaattatgaatttagtgatttcccttggcctgaaagagaaagtaaagattacccttctc |
213 |
Q |
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|||||||||| | ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||| || | |||||| |
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| T |
6898749 |
cattgttcctcaaaatgtactaagcttcaatcaccaacatgtaattatgaattcagtgatttcccttggcctgaaagggaaagttctgaacatccttctt |
6898650 |
T |
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| Q |
214 |
atgctgagattttggaatacttgcatctttatgccgttta |
253 |
Q |
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||| |||||||||||||||||| | | |||||||||||| |
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| T |
6898649 |
atgttgagattttggaatacttacgtgcttatgccgttta |
6898610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 51731568 - 51731488
Alignment:
| Q |
23 |
tggagttagtggcatagccgtagcaaaacaactatcacactacaaccctattgtttttgaagccactgattcaattggtgg |
103 |
Q |
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|||||| ||||||||||| | |||||||| |||| |||| |||| |||||||| |||||||||||||| || |||||||| |
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| T |
51731568 |
tggagtaagtggcatagcaattgcaaaacagctattacaccacaatcctattgtatttgaagccactgactccattggtgg |
51731488 |
T |
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