View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_low_22 (Length: 252)
Name: NF19889_low_22
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 10569644 - 10569869
Alignment:
| Q |
7 |
aaaaaccagtatagcaagataaaaaatgcaggaaattaatatgtggaaaatcaaaacgtaatacataaccaacaactaaaaataaaaacgtgatttggaa |
106 |
Q |
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| T |
10569644 |
aaaaaccagtatagcaagataaaaaatgcaggaaattaatatgtggaaaatcaaaacgtaatacataaccaacaactaaaaataaaaacgtgatttggaa |
10569743 |
T |
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| Q |
107 |
ataatccttgataccatatattaatcaatataatataaaggttttcaaaaatgcaatcataatagtagtacactacaacaaactttcagaccaactcatt |
206 |
Q |
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| T |
10569744 |
ataatccttgataccatatattaatcaatataatataaaggttttcaaaaatgcaatcataatagtagtacactacaacaaactttcagaccaactcatt |
10569843 |
T |
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| Q |
207 |
cacggtgggcgtttaggatgaatccgt |
233 |
Q |
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| T |
10569844 |
cacggt-ggcgtttaggatgaatccgt |
10569869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 10552147 - 10552279
Alignment:
| Q |
7 |
aaaaaccagtatagcaagataaaaaatgcaggaaattaatatgtggaaaatcaaaacgtaatacataaccaacaactaaaaataaaaacgtgatttggaa |
106 |
Q |
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| T |
10552147 |
aaaaagcagtgtagcaaaacacaaaatgcaacaaattagtatgtg-aaaatcaaaatgtaatatagaacccacaattgaaaatcaaaacgtgattttgaa |
10552245 |
T |
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| Q |
107 |
ataatccttgataccatatattaatcaatataat |
140 |
Q |
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| T |
10552246 |
ataatcctttataccatatattaatcaatataat |
10552279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 10552317 - 10552359
Alignment:
| Q |
167 |
aatagtagtacactacaacaaactttcagaccaactcattcac |
209 |
Q |
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| T |
10552317 |
aatagtagtacactacaacaaggtttcagaccaactcattcac |
10552359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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